KEGG   Clostridium cochlearium: SAMEA4530647_1422
Entry
SAMEA4530647_1422 CDS       T06756                                 
Symbol
fliA
Name
(GenBank) RNA polymerase sigma factor for flagellar operon fliA
  KO
K02405  RNA polymerase sigma factor FliA
Organism
ccoh  Clostridium cochlearium
Pathway
ccoh02020  Two-component system
ccoh02040  Flagellar assembly
Brite
KEGG Orthology (KO) [BR:ccoh00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    SAMEA4530647_1422 (fliA)
 09140 Cellular Processes
  09142 Cell motility
   02040 Flagellar assembly
    SAMEA4530647_1422 (fliA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ccoh03021]
    SAMEA4530647_1422 (fliA)
  09183 Protein families: signaling and cellular processes
   02035 Bacterial motility proteins [BR:ccoh02035]
    SAMEA4530647_1422 (fliA)
Transcription machinery [BR:ccoh03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     SAMEA4530647_1422 (fliA)
Bacterial motility proteins [BR:ccoh02035]
 Flagellar system
  Flagellar assembly proteins
   Stator
    SAMEA4530647_1422 (fliA)
SSDB
Motif
Pfam: Sigma70_r4 Sigma70_r2 Sigma70_r4_2 Sigma70_r3 HTH_23 Sigma70_ECF PCI DUF1492 HTH_3 Phage_terminase AAA_23
Other DBs
NCBI-ProteinID: SNV80646
Position
1:complement(1391814..1392545)
AA seq 243 aa
MSIAETCDVKEELVKKYIPLVKYIASRVIIGKTKYIDYDDLVGYGMLGLMDAMKKFDPSK
GMKFSTYASIRIRGSMIDELRRISPIPKSAMDKLNKYNEAVEKLQMKNFKEPKLEEVAKE
LDMSLKEVSQIENYINYISVVSLEDFIFSDDEDISLMSTVVDKDSPSPEKTLEEKELIEY
LEKAINKLKERDRIVLSLYYYERLTLKEIGKVLEVSESRVCQLHSRAIVHLRNELKKLKI
INY
NT seq 732 nt   +upstreamnt  +downstreamnt
atgtccatagctgagacatgtgatgttaaggaagaactagtaaaaaaatatattcccctt
gtaaaatatatagcatctagagttattataggaaaaaccaagtatatagattatgatgat
ctagtaggatatggaatgcttggacttatggatgctatgaaaaaatttgatccatctaag
ggaatgaaattttctacttatgcatctataagaataagaggatcaatgatagatgagtta
agaagaataagtcctataccaaaaagtgccatggacaagcttaataaatacaatgaggca
gtagaaaagctgcaaatgaaaaactttaaagaacctaagctagaagaagtggcaaaggaa
ttagatatgtctttaaaagaagtatctcaaatagaaaattatataaattatatatctgta
gtatccttagaggattttatattttctgatgacgaggatatatctctaatgtccactgtg
gtagataaagatagtccgagccccgagaaaactttagaagaaaaagaattaattgagtat
ttagaaaaggctataaataaattaaaagaaagagatagaatagtattatcattgtattat
tatgaaagacttactttaaaggaaataggtaaggttttagaggtttcggaatctagagta
tgtcaattacatagtagagctattgtccatttaagaaatgagctaaaaaaactaaaaatt
ataaattattaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein domain (11)   
   Pfam (11)   
All databases (19)   

Download RDF
DBGET integrated database retrieval system