KEGG   Campylobacter coli 76339: BN865_15960c
Entry
BN865_15960c      CDS       T02811                                 
Name
(GenBank) DNA-directed RNA polymerase beta' subunit
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
ccol  Campylobacter coli 76339
Pathway
ccol03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:ccol00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    BN865_15960c
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ccol03021]
    BN865_15960c
   03400 DNA repair and recombination proteins [BR:ccol03400]
    BN865_15960c
Enzymes [BR:ccol01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     BN865_15960c
Transcription machinery [BR:ccol03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     BN865_15960c
DNA repair and recombination proteins [BR:ccol03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      BN865_15960c
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 Peptidase_M23
Other DBs
NCBI-ProteinID: CDG57778
Position
complement(1535276..1539826)
AA seq 1516 aa
MSKFKVIEIKEDARPRDFEAFQLRLASPEKIKSWSYGEVKKPETINYRTLKPERDGLFCA
KIFGPIRDYECLCGKYKKMRFKGVKCEKCGVEVANSKVRRSRMGHIELVTPVAHIWYVNS
LPSRIGTLLGVKMKDLERVLYYEAYIVENAGDAYYDNESTKKVEYCDVLNEEQYQNLMQR
YENSGFKARMGGEVVRDLLANLDLVALLNQLKEEMAATNSEAKKKTIIKRLKVVENFLNS
NLNANTNSEDAVPNRPEWMMITNLPVLPPDLRPLVALDGGKFAVSDVNDLYRRVINRNTR
LKKLMELDAPEIIIRNEKRMLQEAVDALFDNGRRANAVKGANKRPLKSLSEIIKGKQGRF
RQNLLGKRVDFSGRSVIVVGPKLRMDQCGLPKKMALELFKPHLLAKLEEKGYATTVKQAK
KMIENKTNEVWECLEEVVKGHPVMLNRAPTLHKLSIQAFHPVLVEGKAIQLHPLVCAAFN
ADFDGDQMAVHVPLSQEAIAECKVLMLSSMNILLPASGKSVTVPSQDMVLGIYYLSLEKV
GAKGSHKICTGIDEVMMALESKCLDIHASIQTMIDGRKITTTAGRLIIKSILPDFVTENM
WNKVLKKKDIAALVDYVYKQGGLQITASFLDKLKNLGFEYATKAGISISIADIIVPSDKQ
KAINEAKKQVREIQNSYNLGLITSGERYNKIIDIWKSTNNTLSRDMMKLVEKDKDGFNSI
YMMADSGARGSAAQISQLAAMRGLMTKPDGSIIETPIISNFREGLNVLEYFISTHGARKG
LADTALKTANAGYLTRKLIDVAQNVKITVEDCGTHEGVEINEITADSSIIETLEERILGR
VIAEDVIDPITNSVLFTEGTLMDEEKARILGESGVKSVNIRTPITCKAKKGICAKCYGIN
LGEGKLVKPGEAVGIISAQSIGEPGTQLTLRTFHSGGTASTDLQDRQVSAQKEGFIRFYN
LKTYKNKEGKDIVANRRNAAILLVEPKIKAPFKGIINIENIHEDVIVSIKDKKQEAKYIL
RKYDLAKPNELAGVSGSIDGKLYLPYQSGAEVEENESIVEMIKEGWNVPNRIPFASEILV
KDGDPVVQNIKAGEKGTLKFYILKGDGLDRVRDVKKGDVVKEKGFFVVVADENDREAKRH
YIPRESRIEFNDSEEVDFDSIIASAPKQEKSVIAEWDAYNNTIIAEIDGVVSFEDIEAGY
SADEQIDEATGKRSLVINEYLPSGVRPTLIIAGKGDKAVRYQLEPKTVIFVHDGDKISQA
DILAKTPKAAAKSKDITGGLPRVSELFEARKPKNAAVIAEIDGVVRFDKPLRSKERLIIQ
AEDGTSAEYLIDKSKHIQVREGEFIHAGEKLTDGVVSSHDVLKILGEKALHYYLISEIQQ
VYRGQGVVISDKHIEVIVSQMLRQVKIIDSGHTKFIEGDLVSRRKFREENERILRLGGEP
AIAEPVLLGVTRAAIGSDSVISAASFQETTKVLTEASIAGKFDYLEDLKENVILGRMIPV
GTGLYGEQNLKLKEQE
NT seq 4551 nt   +upstreamnt  +downstreamnt
atgagtaaatttaaagtaatagaaatcaaagaagatgcaagacctagggattttgaagca
tttcaacttagacttgcgagtcctgaaaaaattaaatcttggtcttatggtgaagtaaaa
aagccagagactattaattatagaactttaaaaccagaaagagatggtcttttttgtgct
aaaatttttggacctattagagattatgaatgtctttgcggtaaatataaaaaaatgcgc
tttaagggtgttaagtgtgaaaaatgtggggttgaagttgcaaattcaaaagttcgtcgt
tctagaatggggcacattgaacttgtaactccagtagctcatatttggtatgttaattct
cttccaagtcgtataggaacacttctaggcgttaagatgaaagatcttgaacgcgtactt
tactatgaagcttatatcgtagaaaatgcaggagatgcgtactatgataatgaaagcact
aaaaaagtagaatattgcgatgtattgaatgaagagcaatatcaaaatttgatgcagcgt
tatgaaaacagtggttttaaagcaagaatgggtggcgaagttgttcgtgatttattagca
aatttagatcttgtggcgcttttaaaccaacttaaagaagaaatggctgctacaaattca
gaagctaagaaaaaaaccattataaagcgtttaaaagtcgtagaaaactttttaaattcg
aatttgaatgcaaatacaaatagtgaagatgcagtaccaaatcgtcctgaatggatgatg
attacaaatctaccggtattgccacctgatttgcgtcctttggttgctttggatgggggt
aaatttgcagtttctgatgtaaatgatttatatcgccgtgttatcaacagaaacacgcgt
cttaaaaagcttatggagcttgatgcacctgaaattattataagaaacgaaaaaagaatg
cttcaagaagctgtagatgcactttttgacaatggtcgtcgtgctaatgctgttaaagga
gcaaataaacgcccattaaaatctttgagtgaaattatcaaaggaaaacaaggtcgtttt
agacaaaacttgctaggtaaaagggtggatttttcaggtcgtagcgttatcgttgtaggt
ccaaaacttagaatggatcaatgtggcttgcctaaaaaaatggctttagagctttttaaa
ccgcacctattagcaaaacttgaggaaaaaggttatgctactacagtaaaacaagccaaa
aaaatgatagaaaacaaaaccaatgaagtttgggaatgtttagaagaggtggtaaaaggg
catcctgttatgctaaaccgtgctccaactctacataagctttctatccaagctttccat
cctgttttggttgaaggaaaggcaatacagcttcatcctttagtttgtgcggcatttaac
gcggactttgacggagaccaaatggcggtgcatgtgccactttctcaagaagcaattgca
gagtgtaaggttttaatgctttcttctatgaatattcttttgcctgcaagcggaaagtct
gtgactgtaccttctcaagatatggttttgggaatttactatctttctttagaaaaagtg
ggtgcaaaaggttcacataagatatgcacaggtatcgatgaagtaatgatggctcttgaa
agtaaatgtcttgatattcatgctagcatccaaaccatgattgatggtagaaagattact
acaactgcaggaagacttattattaaatctattcttcctgattttgttactgaaaatatg
tggaacaaggtgttaaagaagaaagatattgctgcgcttgtagattatgtgtataaacaa
ggtggtttgcaaattactgcaagtttcttggataaacttaaaaatttaggttttgaatat
gcaactaaagcaggtatttctatatctatcgctgatattatcgttcctagcgacaaacaa
aaggctattaatgaagctaaaaaacaagtaagagaaattcaaaattcttacaatcttggt
ttgatcacttcaggtgagagatataacaaaattattgatatttggaaaagtactaataat
actctttcaagagatatgatgaagcttgttgaaaaagataaagacggctttaactctatt
tatatgatggcggattcaggtgctaggggtagtgcagctcaaatttctcagcttgctgca
atgagaggcttgatgactaaacctgatggttcgatcatcgaaacgcctattatttcaaat
ttccgtgaaggtttgaatgttcttgagtattttatttcaactcacggggctagaaaaggt
ttggcagataccgctcttaagacagcgaatgcgggttatttgacaagaaagcttatcgat
gtagcacaaaatgtaaaaattaccgttgaagattgtggaacacatgagggtgttgaaatc
aatgagattactgcagatagttctattatagaaaccttggaagaaagaattttaggtagg
gttatagctgaagatgtaatcgatcctattacaaattccgtactttttacagaaggtact
ttaatggatgaggaaaaagctagaatactaggcgaaagtggtgtaaaaagcgtaaatatt
cgcactccaatcacttgtaaggctaaaaaaggaatttgtgcaaaatgttacggaattaac
ctaggtgaaggcaagcttgttaaaccaggtgaggcagtaggtatcatttctgctcaatct
attggtgaaccaggaactcagcttacgcttagaactttccatagtgggggaactgcaagt
acggatttacaagatagacaagtaagtgcccaaaaagaaggttttataagattttataat
cttaaaacttataaaaataaagagggtaaagacatagtagctaatcgtagaaatgcagct
attttacttgtagagccaaaaattaaagcaccatttaagggtattattaatatagaaaat
atccacgaagatgtaattgtttctataaaagataaaaaacaagaagcaaaatacattctt
agaaaatacgatcttgctaaaccaaatgaattagcgggcgttagcggaagcattgatgga
aaactttatttaccatatcaaagtggtgctgaagttgaagaaaatgaaagtattgttgag
atgattaaagagggttggaatgttccaaaccgtatcccatttgcaagtgaaattcttgta
aaagatggagatcctgttgtgcaaaatatcaaggcaggagaaaaaggtactttaaaattc
tatattcttaaaggcgatgggcttgatagggtaagagatgttaaaaaaggcgatgtggta
aaagaaaaaggattttttgttgtagttgctgatgaaaatgatagagaggcaaaaagacat
tatatcccaagagagtcaagaatagaatttaacgacagtgaagaagtggattttgattct
ataattgctagtgcaccaaaacaagaaaagtcagttatcgcagaatgggatgcttacaat
aacactattattgcagagattgatggtgtggtaagttttgaagatatagaagcaggctat
agtgcggatgagcaaattgatgaagcaactggtaagcgctcactagtgattaatgaatat
ttaccaagtggggtaagaccaaccttgatcatcgcaggcaaaggcgataaagcagtgcgt
tatcaattagaaccaaaaacagttattttcgttcatgatggtgataaaatttctcaagca
gatattttggcaaagactccaaaagcagcagcgaaatcaaaagatatcactgggggtctt
ccaagagtttcagagctttttgaagcaagaaaaccgaagaatgcagcagtaattgcagag
attgatggtgtggttcgttttgataaacctttgcgttcaaaagaaagattgattatccag
gcagaagatggcacaagtgctgagtatttaatcgataaatcaaaacatattcaagtaaga
gaaggtgaatttattcacgcaggtgagaagttaactgatggagtagtttcaagtcatgat
gtgcttaaaattttaggtgaaaaggccttgcattattacttgatttctgaaattcaacaa
gtttatcgcggtcaaggggttgttatttctgataagcatattgaggttattgtttctcaa
atgttaagacaggttaaaattatcgatagcgggcatactaaatttatcgaaggggatttg
gtttcaagacgcaaattccgtgaggaaaatgagagaattcttagattgggcggagaacca
gctattgctgagcctgtgcttttaggtgttacaagagcagcgataggaagtgatagtgtg
atttctgcagcttcattccaagaaacaacaaaagtacttaccgaagcaagtatcgcgggt
aaatttgactacttagaagacttaaaagaaaatgttattttgggtagaatgattcctgtt
ggaacagggctttatggtgagcaaaatttaaaactcaaagaacaagaataa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (6)   
   Pfam (6)   
All databases (16)   

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