KEGG T04527: ATE51

Campylobacter coli OR12: ATE51_05013

Entry

ATE51_05013       CDS       T04527

Symbol

topA

Name

(GenBank) DNA topoisomerase 1

K03168

DNA topoisomerase I [EC:5.6.2.1]

Organism

ccoo Campylobacter coli OR12

Brite

KEGG Orthology (KO) [BR:ccoo00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ccoo03032]
    ATE51_05013 (topA)
   03400 DNA repair and recombination proteins [BR:ccoo03400]
    ATE51_05013 (topA)
Enzymes [BR:ccoo01000]
5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.1  DNA topoisomerase
     ATE51_05013 (topA)
DNA replication proteins [BR:ccoo03032]
Prokaryotic type
  DNA Topoisomerases
   ATE51_05013 (topA)
DNA repair and recombination proteins [BR:ccoo03400]
Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Facilitator
      ATE51_05013 (topA)

SSDB

Motif

Pfam:

Topoisom_bac Toprim Toprim_4

Other DBs

NCBI-ProteinID:

ALV00718

Position

pOR12Vir:9806..11773

AA seq 655 aa
MENTIIIIESPNKREKIEKITGAKVYATKGHFKSLSKNFLKEYENYEPIFDFSSDETKKR
MNAIFADCKNKDVIIATDPDREGYGIAYLFYEVIKNIAKSIKRAEFHEITESGINKGLKN
AVEFSKSNLNDFEAFKARIVGDKLVGFIMSPKYINKMNDKNISVGRVQTPALSLIVEREK
AIQDFLNDDNNKKLDYKIKAKLEKDGIVFYANNPNLYPNKEEALEKIESLRSKNAKLYTI
ETKKSEIKPAQPFRTSQFQEKANKIFGFAPDKSMALAQKLFEKGLITYHRTDSNALSVEF
LNEVETFFKEKQWYQKREYKAGDQSQAEAHEAIRISHLHSFEDIEKIAREENLSDDEKNT
YTLIYLNSIQSQAKNAINEITSYDFNIGILSFKTNISKCIDKGFKGAFDFKEEDEKDEKD
DTQELELNIKEGEEIQVLDFELIEVKKQAPRRYKESNFISLLEKEGIGRPSTYASFLKTL
LDREYVELATKGKNKEIVATKKGISLIDFLNENDDEWITKSEFTKQMEEILDTISKGNLQ
YIDFIKPLHQKMEFIHIDDSDQIRKPSEKQIAFAEKLAKENNLELPKDYKENIKVCMDFL
EKAKENAKPLPASAKQIAFAEKLAKENNLELPKDYKENIKVCSSFIDEAIKKNKK

NT seq 1968 nt +upstreamnt +downstreamnt
atggaaaatacaattattattatagaaagtcctaataaaagggaaaaaatagaaaaaatc
acaggagctaaggtttatgctactaaagggcattttaaaagtttaagtaaaaacttttta
aaagaatatgaaaactacgagcctatttttgatttttcaagcgatgaaaccaaaaaaaga
atgaatgctatttttgcagattgtaagaataaagatgtgattatagctacagaccctgat
cgtgaaggttatggtatagcttatttattttatgaagtgataaaaaacattgctaaaagt
attaaaagagcagaatttcacgaaattacagaaagtgggatcaataaaggcttgaaaaat
gctgtagagttttcaaaaagtaatttaaatgattttgaagcatttaaagcaagaattgta
ggcgataaattggtgggttttataatgtcgcctaagtatattaataaaatgaatgataaa
aatatttctgtaggaagggtgcaaacacctgctttatccttaattgttgaaagagaaaaa
gccatacaagattttttaaacgatgataataataaaaaactagattataaaattaaagca
aaattagaaaaagatggcatagttttttatgcaaataatcccaatctttatccaaataaa
gaagaagctttagaaaaaatagaaagtttaaggagtaaaaacgcaaaactttatactata
gaaactaaaaaaagcgaaataaaaccagcacagccctttagaacttcacaatttcaagaa
aaggctaataaaatctttggttttgctcctgataagtcaatggcattagctcaaaaactc
tttgaaaaaggattaattacttatcatagaaccgatagtaatgctttgtcagttgaattt
ttaaatgaagttgaaactttttttaaagaaaaacaatggtatcaaaaaagagaatataaa
gcaggagatcaaagtcaagcagaagcacacgaagctataagaatatctcatttacatagc
tttgaagatatagagaaaattgctagagaagaaaatcttagtgatgatgaaaaaaatacc
tatactttaatttatttaaactcaatacaaagccaagctaaaaatgctattaatgaaatt
acaagctatgattttaacataggtattttaagttttaaaaccaatatcagcaaatgtatt
gataaaggttttaaaggggcttttgattttaaagaagaagatgaaaaagacgaaaaagac
gatactcaagaactagagcttaatataaaagaaggcgaagaaatacaagttttagatttt
gaattaattgaagttaaaaaacaagccccaagaagatataaagaaagcaattttatctcc
cttttggaaaaagaaggcataggacgccctagcacttatgcaagttttttaaaaacttta
ttagatagagaatatgtagaattagctactaaaggaaaaaacaaagaaatagtggcaact
aaaaaaggaatatcattaattgattttttaaatgaaaacgatgatgaatggatcacaaaa
tcagaattcacaaaacaaatggaagaaattttagacactatttcaaaaggaaatttgcaa
tatattgattttattaaacctttacatcaaaaaatggaattcatacacattgatgatagc
gatcaaataagaaaacctagtgaaaagcaaatagcctttgctgaaaaacttgctaaggaa
aataacttagaattaccaaaggactataaagaaaatataaaagtttgtatggattttctt
gaaaaagctaaagaaaatgctaaacctttacctgcgtcagctaagcaaatagcctttgct
gaaaaacttgctaaggaaaataacttagaattaccaaaggactataaagaaaatataaaa
gtttgttcttcttttattgatgaagcaataaaaaagaataaaaaataa

All links

Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (3)   
   Pfam (3)   
All databases (12)   

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