KEGG   Chondrus crispus (carragheen): CHC_T00002315001
Entry
CHC_T00002315001  CDS       T02916                                 
Name
(RefSeq) hypothetical protein
  KO
K03129  transcription initiation factor TFIID subunit 4
Organism
ccp  Chondrus crispus (carragheen)
Pathway
ccp03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:ccp00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    CHC_T00002315001
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ccp03021]
    CHC_T00002315001
   03036 Chromosome and associated proteins [BR:ccp03036]
    CHC_T00002315001
Transcription machinery [BR:ccp03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     CHC_T00002315001
   Coactivators
    SAGA/TFTC/STAGA complex
     CHC_T00002315001
Chromosome and associated proteins [BR:ccp03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    TFTC complex
     CHC_T00002315001
SSDB
Motif
Pfam: TAF4
Other DBs
NCBI-GeneID: 17321106
NCBI-ProteinID: XP_005713396
UniProt: R7Q6Z9
AA seq 918 aa
MPNINARAADSKVSAEYRRQQLQAKAIPKREPTASVGGHVRAVTSSAAASSQSAASSARP
DITAELNAVMKKTGTSTHARGASRAVPVAGIPQQRMPPGQPAPGQGRPQAAKISQEQVIV
GHFCRFAIKTLTKVMEGSPLKQTAEVSLKEHIKKAWAQWVRGHIPRQKLLESVARFVRDS
CPQAFGIDLIREFKEWYESEFERQKAQSGRGERKVPQQQFQHVGQQQRRQVVQNKQIPLH
IHQMKQQQARSAALQPPGANAKMQYSMPGTVPGRAAVGSKASGKEAQLINPHIVKKEAQL
PGKTGGKSISRKTVPSRKTSSPNTPKVGASRAAPGKAPGVRSIGGKSILRPPSTLPAAHV
ALKGPTATNVPKVSVMGGVAGKAVTGSKGLLANKLPAGLVHKVAPGTKPKGPRKAPVKNA
AKTSPLKGAAKSQASKSLSKTISKGSVVRQKPSLPVISGSAGAGSAAVAPGSIKRPFDAG
SGSPTGSSMKKPKPTPKASKGPTNRRKAGPFPSSTDPNRPTKPQPARIDTAKGRTGPGTN
MGSGGGSALATGKGGSSNSAPGGTGPGTQVRKAKRVDDELNLVNDVVDLDDEVDKLGEDA
GVVNTEVIEIIDYDPGMLLSGPALRTKMQVTAKRYALSENISKDAMEIVSLAVQERLRNL
LESLKGIARVRIEANKESWNTEYFGQNVHEKLELMREDEERSLTVAAELRVKRKKEQEER
EAKKLAGEAEMEEKKIKDASAAAELERKEKIALEKKRKENSSQRDALSGLVAGIDKRRKK
PATGKGLAGLAPLLPPITKSGGSRTSGSSLPPIPKLVSSAGGDSMSNKSVGTNGKKIDQL
EKLKALCPLVSLGGPRTSSMPGTEPSAKKDVPKPQPKLPLTLRDCIFLMESEQNTRKSSH
IYKWYARLNRVRQAVKGK
NT seq 2757 nt   +upstreamnt  +downstreamnt
atgcccaatatcaacgccagagccgccgacagcaaggtttctgccgaatataggagacag
cagctgcaagcaaaggccatcccgaagagagagcctaccgcatccgtcggggggcacgtg
cgcgctgtcacaagtagcgctgcggcgagttcgcagtctgccgcgtcatcagcccggccg
gatattacggccgagctcaacgccgtcatgaagaaaactggcacttcaacccatgctagg
ggagcttctcgtgccgtgccagtcgcagggataccgcagcagcgcatgccaccaggccag
cccgcaccggggcagggccgtcctcaggcggctaagatttcgcaagagcaagttatcgtt
ggtcacttttgccgctttgcaatcaagactctgactaaagttatggaaggaagcccgctc
aaacagacagcggaggtcagcttaaaggagcatattaagaaagcgtgggctcagtgggtg
agaggacacattccgcggcagaagctgctcgagtctgtagctcgctttgtgcgagatagc
tgcccccaagcgtttggcattgacctgattcgagagtttaaggagtggtacgagagcgag
tttgagcggcaaaaagctcagtcaggccgcggggaaagaaaggtgccgcagcaacagttt
cagcatgtgggccaacagcagagaaggcaggtggtgcagaacaaacagattccgttgcac
atccatcaaatgaagcagcagcaggcgcgatccgcggccttgcagccaccaggcgccaat
gcgaagatgcagtattcgatgccggggacagttccagggagagctgcagtagggtcgaag
gcttctggaaaggaggcacaactgataaacccgcatattgtgaaaaaggaagcccaactg
cctgggaagactggtggaaagagtatatccagaaaaacggtaccttcgagaaagacatcc
tctccaaacacaccaaaggttggtgcaagcagagcagcacctgggaaagctcctggggtc
agatccatcggaggaaagagtatcttacgaccaccatctactctgcccgcagcacatgtt
gccttgaaaggccctactgcgaccaatgtaccgaaagtgtctgtgatgggaggtgtagca
ggaaaagcggttacagggagcaaaggattgctggcgaacaaacttcccgcaggtttagtc
cacaaggtagctccgggtaccaaaccaaagggccctcgaaaggcaccggtgaaaaatgcc
gctaagacttctccactgaaaggagctgcgaaatctcaagcatcaaagagtctgagcaaa
accatttcaaagggatccgttgtgaggcagaagccctcattacctgtgatatctggaagt
gcaggagcagggtccgcagcagtcgctccaggctctataaagcgaccattcgatgccggt
agcggatcaccgacgggcagttccatgaaaaaaccgaagccaactcccaaggcgtcgaag
ggacctaccaataggcgaaaagcgggcccttttccttcctccaccgacccgaatagacct
accaagccgcagccggcaaggatcgatacagcaaaggggcgaacaggccccggcaccaac
atgggaagtggaggtggaagtgcgctggctactggcaaaggtggctcctccaactcggct
cctgggggcactggtcctggaactcaagttcggaaggccaagcgcgtcgacgacgagttg
aatcttgtgaacgatgtcgtagacctcgacgatgaggtcgacaaactcggcgaggatgca
ggtgtggtaaataccgaagtcatcgaaattatcgattatgaccccggtatgctcttgtca
ggcccagctctaaggacaaagatgcaagtgactgcgaagcgctacgctctgagcgaaaac
atttcaaaggatgccatggaaattgtttcactggccgtacaagaacggctgcggaacctt
ttggagtctttaaagggcattgcaagggtacggatcgaggctaacaaagagtcttggaac
acggaatatttcggccaaaacgttcacgaaaagctcgagttaatgcgtgaggatgaagaa
cgatctttgactgttgctgcggagttacgcgtgaagagaaagaaagagcaggaggaacgc
gaggcaaagaagctcgctggggaggctgaaatggaagagaagaagattaaagatgctagt
gcggcagccgagctcgagcgaaaggagaagatcgctctagagaagaagcgcaaagagaat
agtagtcaacgagatgccttgtccggattagtagcgggtattgacaagaggcgcaagaag
ccagcaaccggaaaaggcttggcgggattggcgccactactcccgcctatcacgaagtct
ggaggctcccgcacgagtggttcgagcttgcccccaattcctaagctcgtcagctcagcc
ggtggggatagtatgtccaacaagagtgtgggcacgaatggaaagaagatcgatcaatta
gaaaagctgaaggctctctgtcccctagttagtttgggtggaccgcgaacatctagcatg
ccaggaacagaacccagtgcgaaaaaggacgtccccaagccgcaaccaaagctcccgcta
acattaagagattgtatattcttgatggaatcggagcaaaacaccaggaagagctctcat
atttacaaatggtacgcccgtttgaatagagttcgccaagctgtgaagggaaaatag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (28)   
   KEGG ORTHOLOGY (1)   
   RefGene (24)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (1)   
   Pfam (1)   
All databases (37)   

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