KEGG   Chondrus crispus (carragheen): CHC_T00008558001
Entry
CHC_T00008558001  CDS       T02916                                 
Name
(RefSeq) hypothetical protein, conserved, contains radical SAM domain. putative Fe-S-cluster redox enzyme
  KO
K06941  23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
Organism
ccp  Chondrus crispus (carragheen)
Brite
KEGG Orthology (KO) [BR:ccp00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:ccp03009]
    CHC_T00008558001
Enzymes [BR:ccp01000]
 2. Transferases
  2.1  Transferring one-carbon groups
   2.1.1  Methyltransferases
    2.1.1.192  23S rRNA (adenine2503-C2)-methyltransferase
     CHC_T00008558001
Ribosome biogenesis [BR:ccp03009]
 Prokaryotic type
  rRNA modification factors
   23S rRNA modification factors
    CHC_T00008558001
SSDB
Motif
Pfam: RlmN_N Radical_SAM Radical_SAM_2 Fer4_12
Other DBs
NCBI-GeneID: 17321896
NCBI-ProteinID: XP_005714171
UniProt: R7Q746
AA seq 470 aa
MSFHCFHVLRQRLVLRSMRAWPAFTSPTPVFPPAPSRALTSLRRPRPRVPTCSATPSHRG
ARGLATRRSVVPDGTVHPLKADVSPGAGAEPCATVPVDDAGRVLLKNMTLLELERWVEHD
MGHKKFRARQLWRWLYKSDKLVATFEEMTDLSKDFREMLKDTARIDAIVVDKVHESEDGT
KKVTFRLDAGGVIETVLIPTEGRTTVCVSSQWGCALNCQFCFTGRTGFRRSLTQGEIVDQ
VVQAKRFFEQGDMGRVCNVVFMGEGEPAHNIDNVLRAIDVMLDTKGLDFSHNKITVSTSG
LIPEIKRLAQESKANLAVSLHATNNELRSWLMPINRKYPVEELMQTLRDVFPRQAARQQK
VFFQYVMLKGVNDSLVDAKELLRLTAGVPCKVNLIHFNSHEGTEFEASDEGTMLAFQDFL
VKKGMTVTIRKSRGDDKMMACGQLGKLGPRQAPRMKVPGKFEHLVKARAA
NT seq 1413 nt   +upstreamnt  +downstreamnt
atgtccttccactgcttccacgttctccgccagcgcctggtgctgcgctccatgcgcgcg
tggcccgccttcacctcgccaacgccggtgttcccgccggccccctctcgcgctctaacc
tctctgcggcggccgcggccacgcgtccccacgtgctcggcgacgccgtcgcaccgcggt
gcgcggggtctggcgacgcggcgaagcgtggtaccggacggcacggtgcacccgctcaag
gccgacgtcagccccggtgcgggcgccgagccgtgcgcgaccgtccccgtcgacgacgcg
ggccgtgtgttgctcaagaacatgacgcttctcgagctggagcgctgggtcgaacacgac
atgggacacaagaagttccgcgccaggcagctgtggaggtggctgtacaagtcggacaag
ctcgtggctacgttcgaggagatgactgatttgtcaaaggactttcgcgagatgttgaaa
gacacggcgaggattgacgctattgtcgtggataaggtccatgagagcgaggacggcacg
aagaaggtcacgtttcgattggatgcggggggcgttattgagaccgtgcttattccgacg
gaggggaggaccactgtgtgcgtttcgagtcaatggggttgtgcattgaactgccagttt
tgctttaccgggaggacagggtttaggagatcgctgacacagggagagattgttgaccag
gtcgtgcaagcaaagcgcttttttgagcagggcgacatggggagggtttgtaatgttgtt
ttcatgggggagggcgagccggcccataacattgacaatgttctgcgcgcaattgatgtc
atgctggacacaaaggggctggactttagtcataacaagattaccgtgtctacttctggc
ctcattccggaaatcaagcgccttgcgcaggaaagcaaggctaacttggcagtttctcta
catgctacaaacaacgagctgcggagctggttaatgcccatcaaccgaaagtaccctgtg
gaagaactgatgcagacgctcagagatgtgtttccgcggcaggctgcacgtcagcagaag
gttttttttcagtatgttatgctcaagggtgtcaatgactcgcttgttgatgccaaggaa
ctgttacgtcttacagcgggcgtgccttgcaaagtcaacctcattcacttcaactcgcac
gaagggaccgagttcgaagcgagcgatgaaggtactatgctcgccttccaggacttcctc
gtgaagaagggaatgacggtcacaatacgcaaatcgcgcggtgatgataagatgatggct
tgcgggcagctaggcaagctgggtcctaggcaggccccgcggatgaaagttcccgggaag
tttgagcatctcgtcaaagctcgagcggcatga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (23)   
   KEGG ORTHOLOGY (1)   
   RefGene (19)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (4)   
   Pfam (4)   
All databases (35)   

Download RDF
DBGET integrated database retrieval system