KEGG   Chondrus crispus (carragheen): CHC_T00009306001
Entry
CHC_T00009306001  CDS       T02916                                 
Name
(RefSeq) TPR repeat-containing protein
  KO
K03350  anaphase-promoting complex subunit 3
Organism
ccp  Chondrus crispus (carragheen)
Pathway
ccp04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:ccp00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    CHC_T00009306001
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:ccp01009]
    CHC_T00009306001
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:ccp04121]
    CHC_T00009306001
   03036 Chromosome and associated proteins [BR:ccp03036]
    CHC_T00009306001
Protein phosphatases and associated proteins [BR:ccp01009]
 Protein serine/threonine phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-5
    PP5-interacting proteins
     CHC_T00009306001
Ubiquitin system [BR:ccp04121]
 Ubiquitin ligases (E3)
  Multi subunit Ring-finger type E3
   APC/C
    Other subunits
     CHC_T00009306001
Chromosome and associated proteins [BR:ccp03036]
 Eukaryotic type
  Sister chromatid separation proteins
   APC/C complex
    CHC_T00009306001
SSDB
Motif
Pfam: TPR_2 TPR_16 TPR_1 ANAPC3 TPR_19 TPR_17 TPR_8 TPR_7 TPR_14 TPR_11 TPR_12 TPR_6 TPR_9 TPR_15 TPR_4 IKBKB_SDD
Other DBs
NCBI-GeneID: 17319210
NCBI-ProteinID: XP_005711462
UniProt: R7QTY0
AA seq 712 aa
MAVVEDAYDAERLLRSAAEHSLRAFIEPNATFLAERLHLMFPSPSSAHLLATAHLREGNC
SRAAEILRPASTSENRYLYAVCLVRIGTPDALRDAEAQLRGPQAQLDLDRASTSVAPGGA
AGLHLLAEICLRTGRKDEAASLFKKAIKANPTLWVAFDALAKMGIVVAAERVLGTGGDAE
AMQRLLLQPQFDNAMSAGETPRRKNRPTRDRPLSMPSARQEMPNGNAFRTPARMDVNQST
FVTPSPMPASTCNLNTPAAPMQTVGAPARRANRRAAALNNSTQQLIRHSGAGMEDSHVRN
PNDLFATPTATSALPFASGEVRDRHSFRGEVQVKIPKTRSAIAKERDVLRSRQPFEDSQM
ERQHLGAMDLIRALGQIVSELGRFRCQKALDLTERLPRVHRHCGMVLSIRGRAFLEKAEY
AFAEREFLESLKNEPTRMDGVVEYYSTVLWHLKREKQLSQLAIKAQRVYPISSSAWCAAG
NCFSMQRDPDAALKFLQRAIATSKAPNAYPYTLAGHEYMAKENFDSALSAYRQALHIDER
NYKAMYGIGQVLQKQEKFALAQSHFRSAILIHPLNANLHYHLGMALSAAVNASSTTDRFS
KSTKHALIPALAEFETAANLDPANPVPRFERAKILVALKRLPEARRQLESLRDLLPKEAE
VYFELSRVAKQMGDMKTALRSITIALDIEPKDRKYKKALETLSSEIDANGIA
NT seq 2139 nt   +upstreamnt  +downstreamnt
atggccgtcgtggaggatgcatacgatgccgaaaggctgttgcgcagtgccgcagagcac
tcactgcgcgccttcatcgagccaaacgccaccttcctcgccgagcgtctccatctcatg
ttcccctccccttcctcagcccacctcctcgccactgcacatctccgtgaaggaaactgt
tcgcgcgctgctgaaattctcaggcccgcctccacttccgagaatcgctacctctacgcc
gtctgcctcgtccgtatcggcaccccggacgctctacgagacgcagaggcccagctgcgc
ggcccgcaagcacaattagatctcgaccgcgcttcgacgagcgtcgcgccgggaggcgcc
gcgggactccatttgctcgcagagatctgtttgcgcacggggaggaaggacgaggccgct
tccttgttcaagaaggccattaaggccaaccccaccctttgggttgcctttgatgctctc
gccaagatgggaatcgtcgtcgctgccgaacgcgtcctgggtacgggcggggacgctgag
gcgatgcaacgattgctgttgcagccgcagtttgacaatgcaatgtctgctggagagacc
cctagaagaaaaaatcggcccacgcgagaccggcccctcagcatgccttctgcgaggcag
gaaatgccgaatggaaatgcattccgcacaccagcaaggatggatgtcaaccagtcaacc
tttgtcactccatccccgatgcccgccagcacatgcaatttgaacactcccgcggctcca
atgcagacggtaggcgccccagccaggagagcgaacaggagagcggctgctttgaacaat
agtacgcaacagctcatccggcacagcggtgctggcatggaggattcccacgtgcgcaat
ccgaatgatctgtttgcaaccccgactgccacttcagcgcttccatttgcaagtggagaa
gtacgcgataggcattctttcaggggagaagtgcaagtgaagataccgaaaacgcgtagc
gccattgcgaaagaaagagatgtcttgcggtctcgacagccatttgaagactcccaaatg
gaaagacaacatctaggcgcaatggacttaatacgagcccttggtcagattgtctccgag
cttgggcgatttcgatgccagaaggcactcgatttaacagagcgtttaccaagggtgcat
cgacattgcggaatggttttgtccattcgaggtcgcgcgtttttggagaaagccgagtac
gcctttgctgaaagggagtttttagagtcgctgaaaaacgaacctacacgcatggatgga
gtcgtggaatactactcaacggtgttgtggcatttgaaacgggagaagcaactgtcacaa
cttgcaatcaaagcgcaacgcgtatatcccatttcatcaagcgcttggtgtgctgctgga
aattgcttctcgatgcaacgcgatccagatgccgccctcaaattcttgcaacgagcaata
gcaacttcaaaggccccgaacgcctatccatacacattggccggtcacgagtacatggca
aaagaaaactttgattcagctctttcggcttatcgtcaagcactgcatattgatgaaaga
aattacaaggctatgtacggtattggacaagtactccagaagcaagaaaagtttgctctg
gctcaaagccacttccggagcgctattctgattcatcccctaaacgcgaatctgcactac
catcttggcatggcactctcggcagctgttaacgccagcagcactaccgataggttttcg
aagagcaccaagcatgctctgattccagccctagcagagttcgaaacggcagcgaacttg
gaccccgcaaatcctgtcccacggtttgaaagagctaagattcttgtcgctctgaaacgc
ctcccagaagcacgtcggcagttggagagcttgcgagatttgctaccgaaagaagcagaa
gtgtatttcgaattaagccgagtcgcaaagcagatgggagatatgaaaacggcattgcgt
tccataactatcgcgcttgacattgagccaaaagaccgaaagtacaaaaaggcacttgaa
acactcagcagtgagattgacgccaacggcattgcatag

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (16)   
   KEGG ORTHOLOGY (1)   
   RefGene (12)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (16)   
   Pfam (16)   
All databases (41)   

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