KEGG   Corvus cornix (hooded crow): 104684288
Entry
104684288         CDS       T03546                                 
Symbol
GGPS1
Name
(RefSeq) geranylgeranyl pyrophosphate synthase isoform X1
  KO
K00804  geranylgeranyl diphosphate synthase, type III [EC:2.5.1.1 2.5.1.10 2.5.1.29]
Organism
ccw  Corvus cornix (hooded crow)
Pathway
ccw00900  Terpenoid backbone biosynthesis
ccw01100  Metabolic pathways
Brite
KEGG Orthology (KO) [BR:ccw00001]
 09100 Metabolism
  09109 Metabolism of terpenoids and polyketides
   00900 Terpenoid backbone biosynthesis
    104684288 (GGPS1)
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01006 Prenyltransferases [BR:ccw01006]
    104684288 (GGPS1)
Enzymes [BR:ccw01000]
 2. Transferases
  2.5  Transferring alkyl or aryl groups, other than methyl groups
   2.5.1  Transferring alkyl or aryl groups, other than methyl groups (only sub-subclass identified to date)
    2.5.1.1  dimethylallyltranstransferase
     104684288 (GGPS1)
    2.5.1.10  (2E,6E)-farnesyl diphosphate synthase
     104684288 (GGPS1)
    2.5.1.29  geranylgeranyl diphosphate synthase
     104684288 (GGPS1)
Prenyltransferases [BR:ccw01006]
 Terpene biosynthesis
  Prenyl diphosphate synthase
   104684288 (GGPS1)
SSDB
Motif
Pfam: polyprenyl_synt
Other DBs
NCBI-GeneID: 104684288
NCBI-ProteinID: XP_010389828
Position
3:44520212..44542316
AA seq 299 aa
MDGMDETSKRILEPYQYLLQLPGKQVRTKLSQAFNHWLNVPEDKIQVIIEVTEMLHNASL
LVDDIEDNSKLRRGFPVAHSIYGIPSVINCANYVYFLGLEKVLTLDHPDAVKVFTRQLLE
LHKGQGLDIYWRDTYTCPTEAEYKAMVLQKTGGLFGLAVGLMQLFSNYKKDLKPLLNTLG
LFFQIRDDYANLHSKEYSENKSFCEDLTEGKFSFPTIHAIWSRPESTQVQNILRQRTENI
DIKKYCVHYLENVGSFEYTRNTLKELESEAYKQIESLGGNPELVALVQQLSKMFKETAN
NT seq 900 nt   +upstreamnt  +downstreamnt
atggatgggatggatgaaacatctaaaagaatcctagagccataccaatatttgcttcaa
ctaccaggtaagcaagtgagaaccaaactgtcacaggcctttaatcactggctgaatgtt
ccggaagataaaatacaggttatcattgaagtgacagagatgttgcacaatgcaagcctg
cttgtggatgatatcgaagataactcaaagctacggcggggctttccagtggcacacagt
atctatggaattccatctgtaatcaactgtgctaattatgtttattttcttggcttagag
aaggttttaacccttgatcatccagatgctgttaaagtttttacccgtcaacttctggaa
ctccataaaggtcaaggcttggatatttactggagggatacttacacctgtcctacggag
gctgagtataaagctatggtactgcaaaagacaggtggtctctttggattagctgtaggc
ctcatgcagctgttctcaaattataaaaaagacttaaagcctctgcttaacacacttggt
ctcttcttccaaataagagatgactatgccaacttgcactccaaagaatatagtgagaac
aagagtttttgtgaagacttaactgagggcaagttctcattcccaaccattcatgcaatt
tggtcaagacctgaaagtactcaggtgcaaaacattttacgtcagaggacagagaacata
gatataaaaaaatactgtgtacattaccttgaaaatgttggttcctttgagtacactcgg
aatacattgaaagagcttgaatctgaagcctataaacaaattgaatctcttgggggaaac
cctgagcttgtagcactagttcaacagctgagcaaaatgttcaaagaaactgcaaattaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical substance (6)   
   KEGG COMPOUND (6)   
Chemical reaction (6)   
   KEGG ENZYME (3)   
   KEGG REACTION (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (4)   
   RefSeq(pep) (4)   
DNA sequence (4)   
   RefSeq(nuc) (4)   
Protein domain (1)   
   Pfam (1)   
All databases (31)   

Download RDF
DBGET integrated database retrieval system