KEGG T03546: 104686266

Corvus cornix (hooded crow): 104686266

Entry

104686266         CDS       T03546

Symbol

DICER1

Name

(RefSeq) endoribonuclease Dicer

K11592

endoribonuclease Dicer [EC:3.1.26.-]

Organism

ccw Corvus cornix (hooded crow)

Brite

KEGG Orthology (KO) [BR:ccw00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:ccw03036]
    104686266 (DICER1)
Chromosome and associated proteins [BR:ccw03036]
Eukaryotic type
  Gene silencing
   RISC (RNA-induced silencing complex)
    104686266 (DICER1)
   microRNA pathway
    RISC loading complex
     104686266 (DICER1)

SSDB

Motif

Pfam:

Dicer_platform Dicer_dsRBD Dicer_PBD Ribonuclease_3 Ribonucleas_3_3 Dicer_dimer PAZ ResIII DEAD Helicase_C Amidoligase_2

Other DBs

NCBI-GeneID:

104686266

NCBI-ProteinID:

XP_010392939

Position

5:14512786..14580818

AA seq 1921 aa
MKSPALQSLSMAGLQLMTPASSPMGPFFGLPWQQEAIHDNIYTPRKYQVELLEAALDHNT
IVCLNTGSGKTFIAVLLTKELSYQIRGDFNKNGKRTVFLVNSANQVAQQVSAVRTHSDLK
VGEYSSLEITESWTKEKWSQEFSKHQVLVMTCHVALTVLRHEYLSLSDINLLVFDECHLA
IQDHPYREIMKICEDYPSCPRILGLTASILNGKCDPAELEEKIQKLEKILKSNAETATDL
VVLDRYTSQPCEIVVDCGPYTDKSGLYGRLLKELDEALAFLNDCNISVHSKERDSTLISK
QILSDCRAVLVVLGPWCADKVAGMMVRELQKYIKHEQEELHRKFLLFTDTFLRKIHALCE
EHFSPASLDLKFVTPKVIKLLEILRKYKPYERQQFESVEWYNNRNQDNYVSWSDSEDDDE
DEEIEEKEKPETNFPSPFTNILCGIIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFIT
GHGIGKNQPRNKQMEVEFRKQEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLP
TEYRSYVQSKGRARAPISNYIMLADTDKIKSFEEDLKTYKAIEKILRNKCSKSVDANETE
TEPIVDDDDVFPPYVLRPDENSPRVTINTAIGHINRYCARLPSDPFTHLAPKCKTRELPD
HTFYSTLYLPINSPLRASIVGPPMSCARLAERVVALICCEKLHKIGELDDHLMPVGKETV
KYEEELDLHDEEETSVPGRPGSTKRRQCYPKAIPECLRDSYPKPDQPCYLYVIGMVLTTP
LPDELNFRRRKLYPPEDTTRCFGILTAKPIPQIPHFPVYTRSGEVTISIELKKSGFTLSL
QMLELITRLHQYIFSHILRLEKPALEFKPTEADSAYCVLPLNVVDDSSTLDIDFKFMEDI
EKSEARTGIPSTQYTKEMPFIFKLEDYQDAVIIPRYRNFDQPHRFYVADVYTDLTPLSKF
PSPEYETFAEYYKTKYNLDLTNLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPLSSAEKR
KAKWESLQNKQILVPELCAIHPIPASLWRKAVCLPSILYRLHCLLTAEELRAQTATDAGV
GVKSLPADFRYPNLDFGWKKSIDSKSFISLPNSSVVENENYCKHSTIVVPENAAHQGANR
TSSAENHDQMSVSYRTLLNESPSKLQIDVSVELAAINGVSYNKNLANGNCDLVNRDFCQG
NQLDYCRQEIPVQPTTSYPIQNLYNSENQPKPSNECTLPSNKYLDGNANRSTSDGCPKMA
VTTSTSKAINLSKDRADSEKSPCSGYSSKTLGPNPGLILQALTLSNASDGFNLERLEMLG
DSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVSIFDPPVN
WLPPGYIVNQDKSNTDKWEKDEMTKENMLANGKLDDYNDDEENEDLMWRLPKEETDFEDD
FLEYDQEHIKFIDNMLMGSGAFVKKISLSHFSTTDSNYEWKAPKKSSMGNVQCSSDFDDF
DYSSWDAMCYLDPSKAVEEDDFVVGFWNPSEENCGVDAGKQSISYDLHTEQCIADKSIAD
CVEALLGCYLTSCGERAAQLFLCSLGLKVLPVIKKTDWEGTSCATGENSNSEQKNLSPNS
VSASVANSEPSLCKDLEYGCLKIPPRCMFDHPDAEKTLNHLISGFENFEKKINYSFKNKA
YLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALVN
NTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQMEKNEMQGMDSELRRSEEDEEKEED
IEVPKAMGDIFESLAGAIYMDSGMSLEMVWQVYYPMMRPLIEKFSANVPRSPVRELLEME
PETAKFSPAERTYDGKVRVTVEVVGKGKFKGVGRSYRIAKSAAARRALRSLKANQPQVPN
S

NT seq 5766 nt +upstreamnt +downstreamnt
atgaaaagccctgctttgcaatccctcagcatggcgggactgcagctcatgacccctgct
tcctccccaatgggtccattttttggactaccatggcaacaagaagcaattcatgataac
atttacacgccaagaaaatatcaggttgaactgcttgaagcagctttggatcataataca
atagtctgcttaaacactggctcagggaagacttttattgcagtactactcactaaagag
ctgtcctatcagatcaggggagatttcaacaaaaacggaaaaagaactgtgttcttggtc
aactcggcaaatcaagttgctcaacaagtgtcagctgtcaggacacattcagaccttaaa
gtgggagaatattcaagtttagagataactgaatcatggacaaaagagaagtggagtcag
gaattctccaagcatcaggttctggttatgacatgtcatgttgctttgactgttttgaga
catgagtatttatccctgtcagatattaatcttctggtgtttgatgagtgccatctcgcc
atccaggatcatccataccgtgaaattatgaagatctgtgaggattatccatcatgtcct
cgaattttgggattaacagcttccattttaaatgggaaatgtgatcctgctgagttagag
gagaagatccagaaactggagaaaattttaaagagcaatgctgaaactgcaactgatttg
gtggtcttagacagatatacttctcagccatgtgagattgttgtagactgtggaccatat
actgacaaaagtgggctgtatggaagattattaaaggaattggatgaagcactggctttt
ctaaatgactgcaacatatctgtgcattcaaaagaaagagattctaccttaatttctaag
cagatattgtcagactgtcgagctgtgttggttgttctgggaccgtggtgtgcagataag
gtagctgggatgatggtgagagagctgcagaagtatatcaaacatgaacaagaggagctg
cacaggaaatttttattgtttacagacactttcctaaggaaaatacatgcactctgtgaa
gagcacttctcgcctgcctcacttgacctgaaatttgtgaccccaaaagtaataaagctg
cttgaaatcttgcgcaaatacaaaccatatgaacggcagcagtttgaaagtgttgaatgg
tataacaataggaatcaggataattacgtatcttggagtgattctgaagatgatgatgag
gatgaagaaattgaggagaaagagaagccagagactaatttcccatctccctttactaat
attttatgtggaattatttttgtggaaagaagatacacagcagttgttctaaataggttg
ataaaagaagctggcaagcaagatccagaactggcttatatcagtagcaattttataact
ggacatggcattggcaagaaccagcctcgtaacaagcagatggaagtagaatttagaaaa
caggaagaggttcttagaaaatttcgagcacatgagaccaacctacttattgctactagt
attgtagaagagggtgttgacataccaaaatgcaacttggtggtgcgttttgatttgccc
acagagtaccgttcctatgtgcagtcaaaaggaagagctagagcaccaatttccaactac
attatgttagcagatacagacaaaatcaaaagttttgaagaagatcttaagacatacaaa
gcaattgagaagatcctccgaaacaaatgctcaaagtctgttgatgccaatgaaactgaa
actgaacccattgttgatgatgacgatgtctttccaccctatgtattgaggccagatgag
aacagtccaagggttactattaacactgctattgggcacataaacaggtactgcgctaga
ttaccaagtgatccatttacacacctggctcccaagtgtaaaacccgggaactgcctgac
catacattttactctactctctacctgccaatcaactcacctcttcgagcttcaattgtt
ggccctccaatgagttgtgcaagactggctgagagagttgtagctcttatttgctgtgaa
aaactgcacaaaattggtgaactggatgatcatttgatgccagttggtaaagaaacggtt
aaatatgaggaggaacttgatttacacgatgaagaagaaaccagtgttccaggaaggcca
ggctctacaaaacgaagacagtgctatcctaaagctattccagagtgtttgagggatagt
tatcccaaacctgatcagccctgttacttgtatgtaataggaatggtattaacgactcct
ctacctgacgagctcaacttcagaagacgaaagctatatcctcctgaggatacaacaaga
tgttttggcatattgacagccaaacctatacctcaaattcctcactttcctgtgtatact
cgctcgggagaggttacaatatctattgagcttaagaaatctggttttactctgtctctg
caaatgcttgagctgataacacgactccaccagtacattttttcacatattcttcgtctt
gagaaacctgcactagagttcaagcctacagaagctgattcagcctattgtgttctacct
cttaatgttgttgatgactccagcactttggacattgactttaagtttatggaagacatt
gagaaatctgaggcacgtacaggcattcccagtacacagtatacaaaagaaatgcctttt
attttcaagttagaagattaccaggatgcagttatcattccacgatatcgaaattttgat
cagcctcatcgattctacgtagctgatgtatacactgatcttactccactcagtaaattc
ccttcccctgaatatgaaacttttgcagaatattataaaacaaagtacaatcttgacctt
accaatcttaaccagccactgctggatgtggaccacacatcttcaagacttaatcttttg
actcctcgccatttgaatcagaagggaaaagcacttccactaagcagtgctgagaagagg
aaagcaaagtgggaaagtttgcagaataaacagatactggttcctgagctctgtgctata
catcctattccagcatcattgtggagaaaagcagtttgccttcccagcatactttaccgc
ctgcactgccttttgacagcagaggaactaagagctcagacagccactgatgctggtgta
ggggttaaatcacttcctgcagatttcagatatcctaacttggactttggatggaagaag
tctattgacagcaagtccttcatctctcttcctaactcctctgtagtagagaatgaaaat
tactgtaagcacagcacaattgtagtccctgaaaatgctgcacatcaaggtgctaataga
acctcttctgcagaaaaccatgaccaaatgtctgtgagttacagaacattgctcaatgag
tcacccagtaaactccaaattgatgtctcggtagaacttgcagcaattaatggtgtttcc
tataataaaaatcttgccaatggcaattgtgatttagttaacagagacttttgccaagga
aatcagctggattactgcaggcaggaaatacctgtacaaccaactacctcatatcccatt
cagaatttatacaacagtgagaaccagcccaagcccagcaatgaatgtactctaccgagt
aataaataccttgatggaaatgctaacagatctacctcagatggatgccccaagatggca
gtgaccaccagtacttcaaaagctattaatctttcaaaagacagagcagattctgaaaag
agcccttgcagtgggtactcctcaaaaactctcggtcctaatcctggtctcattcttcaa
gctttgactctttcaaatgctagtgatgggtttaacctggagcggctagaaatgcttggc
gattcatttttaaagcatgccatcactacatacttgttttgcacttaccctgatgctcac
gagggacgcctatcatacatgagaagcaaaaaagtcagcaactgtaacttgtatcgcctt
ggaaaaaagaaaggactgccgagtcgcatggtggtgtcgatttttgatcccccagtcaat
tggcttcctcctggttacatagtaaatcaggacaagagcaacactgacaagtgggagaaa
gatgaaatgacaaaggaaaacatgttggctaatggtaaacttgatgattataatgatgat
gaagagaatgaagacctaatgtggaggttgcccaaggaagaaacagactttgaagatgat
tttctggagtatgatcaggagcatatcaaattcattgataatatgttaatgggatcaggg
gcttttgtgaagaaaatttcactctcacacttttcaaccactgattcaaactatgaatgg
aaagcacccaaaaagtcatccatgggtaatgttcagtgttcatcagattttgatgatttt
gactatagctcttgggatgctatgtgctatctggatcctagcaaggctgttgaagaagat
gattttgtagtgggcttctggaatccatcagaagaaaactgtggtgttgatgcaggaaaa
cagtcaatctcctatgacttgcatacggagcagtgtattgctgacaagagcattgcagac
tgtgtggaagccctgttgggctgctatctgaccagctgtggtgaaagagctgctcagctt
ttcctgtgttcattggggctgaaggtgctccctgtaattaaaaagactgattgggaaggc
acttcgtgtgctaccggagagaactctaacagtgagcagaaaaacctttcaccaaattct
gtttctgcttctgtagctaattcagagccttctctgtgtaaagacctggagtatggctgt
ttgaagattccaccaaggtgtatgtttgatcacccagatgctgaaaaaaccctaaatcac
cttatttctggttttgaaaactttgagaagaaaataaattacagttttaagaacaaggct
tatcttcttcaggcatttactcatgcctcttaccattataataccattactgattgttac
cagcgcttagaattcctgggagatgcaattttggactacctcataaccaagcacctttat
gaagacccacggcaacactctccaggagttcttactgacctacgatctgctctagtcaat
aataccatttttgcatcattagctgtaaagtatgactaccacaagtacttcaaagctgtc
tctcctgaactgtttcatgttattgatgactttgtgcagtttcaaatggaaaagaatgaa
atgcaaggaatggattctgagctcagaagatctgaagaagatgaagaaaaagaggaagac
attgaagtaccaaaggccatgggggatatatttgagtcccttgctggtgccatttatatg
gatagtggaatgtctttggaaatggtttggcaagtgtactatccaatgatgaggccacta
atagaaaaattttctgctaatgtgccccgttccccagtgcgagagctgctggagatggag
ccagagacagccaaatttagtcccgcagaaagaacttacgatggaaaggtcagagttaca
gtggaagttgtaggaaagggaaagtttaaaggtgttggcagaagctacaggattgccaaa
tctgcagctgcaagaagagcactacgaagcctcaaagcaaatcaacctcaggtcccaaac
agctga

All links

Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (20)   
   KEGG ORTHOLOGY (1)   
   RefGene (16)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (5)   
   RefSeq(pep) (5)   
DNA sequence (5)   
   RefSeq(nuc) (5)   
Protein domain (11)   
   Pfam (11)   
All databases (44)   

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