KEGG   Corvus cornix (hooded crow): 104687394
Entry
104687394         CDS       T03546                                 
Name
(RefSeq) transcription initiation factor TFIID subunit 4-like
  KO
K03129  transcription initiation factor TFIID subunit 4
Organism
ccw  Corvus cornix (hooded crow)
Pathway
ccw03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:ccw00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    104687394
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ccw03021]
    104687394
   03036 Chromosome and associated proteins [BR:ccw03036]
    104687394
Transcription machinery [BR:ccw03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     104687394
   Coactivators
    SAGA/TFTC/STAGA complex
     104687394
Chromosome and associated proteins [BR:ccw03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    TFTC complex
     104687394
SSDB
Motif
Pfam: TAF4 TAFH
Other DBs
NCBI-GeneID: 104687394
NCBI-ProteinID: XP_010394789
Position
11:19774675..19920857
AA seq 1009 aa
MAAGASDPLEEMLLFSEEVDEKALSDLVGSLESQLAGGRGPAEPPPPRTSAPSQQPQPQQ
GSLAGGSSPGRQQHGRPAPPPAPGAGEVAGRPGSAGSRAPAQGPLPSPSPPAAAAAAAGR
GASVNSSSVQQSHGAAPGGGSPAAPALPQPAAPAQPVNNHVAAAAAAARDAGSPGPGPSP
PAADSAPGAAGGGGTLAGGGGAAGAAEGAAAAPAPRPGEAAPNGEGAGARAAAVPPVSGH
GGAAAAQPQPAAGALPAVTALGASASPAPAPPAPGSAPPAPAAPAAPKPAVTAKAGAALP
AAPQAVSPRPALGAAPRIVAPQLIVRPPPQTTIQLPPGFTIPPGMVLVRTDAGQLVMVPQ
QALAQAQMQAQVQTQGQGPASLSPRLSVPTTGPVFRLSTAQQPTSVAASSVRLGLPVQAK
VVPSTAAPVSATATLPGGAVLSHTTVSVATTSAQNLFKTTVATGTSSSQQPAVITGGQSQ
GSAQPQGQPRLPLPPHTAAQVPAQPLVIPSSPVPGTTVVSQEMQENVKKCKNFLATLIKL
ASHNSPSPETSRNVKALVQDLLDAKIDPEEFTGRLQTELKSSPQPYLVPFLKKSLPALRQ
SLLNSQHLVLQGQPSQQSLQQTKLSQVIPQSASGSISSVVTTQTIGIRQPNNICTVSVSN
TVQPPQVKVVQSNQSSQLQIIQSTSAQTVKRTPACQTTQIRMPVVITQTIRPQGTVGKAP
TIQASKSPGGFGVQVSANQKNKLNDPGGGSFRDDDDINDVASMAGVNLNEESARIMATNS
DLVGTQIQSCKDEPFLAAIPLHKRILETAKKLGITDVPAEVVTFISHATQNRLRTVIEKV
TVITQHRMESYKDDEWYEQATDVRSQLKFFEQLERLEKQRKDEQEREILLKAAKSRSRQE
DPEQARLKQKAKEMQQQELAQMRQRDANLTALAAIGPRKKRKLDAPGLLTIGGEGVGVCA
GSQAGLGTASPRQYPRQKITRVNLRDFIFYMEQEREMSHSLLLYRALLK
NT seq 3030 nt   +upstreamnt  +downstreamnt
atggcggcgggcgcgtcggacccactagaggagatgctgctcttctccgaggaggtggac
gagaaggcgctcagcgacctggtgggatccctggaatcgcagctggccggcggccgcggc
cccgccgagccgcccccgcccaggacctccgccccgtcccagcagccgcagccgcagcag
gggagcctggcggggggcagcagccccggccggcagcaacacggccgccccgcgccccct
cccgcgcccggggcaggggaggtggcggggcgccccggcagcgcggggagccgagcccct
gcccaggggcctctcccgtccccgtctcccccggcggcggcggcagcggcggcggggagg
ggagcgagtgtaaacagtagtagtgtgcagcaatcacatggagcggctcccggcggcggc
agccccgccgcgcccgccctgccgcagcccgccgcccctgcccagcctgtcaacaaccat
gtggccgctgcagccgccgccgcgcgggacgcggggagccctggccccggccccagcccg
cccgccgccgacagcgcgcccggggccgcggggggcggcgggaccctggcggggggcggc
ggagcggcgggagcggccgagggcgccgccgctgcccccgcgccgcgccccggcgaggcg
gcgcccaacggggagggcgcgggggcccgggcggccgcggtgccgcccgtcagcgggcac
ggcggggccgccgccgcgcagccccagcccgcggccggcgcgctgcccgcggtcaccgcg
ctcggcgcctccgccagccccgcgcccgcaccgccggccccgggctcggccccgccggcc
cccgcggcccccgccgcgcccaagcccgcggtcacggccaaggcgggcgctgccctgccc
gccgccccccaggccgtgtcgccgcggccggcgctgggcgctgccccccggatcgtggcc
ccgcagctgatcgtgcggccgccgccgcagactaccatccagctgccccccggcttcacc
atcccgcccgggatggtcctggtgcgcacggatgctggacagctcgtgatggtgccccag
caggctctggcacaggctcagatgcaggctcaagtgcagacacagggacagggtcctgcc
agcctgtcacccaggctttctgtgcccacaactggccctgtttttcgcctgtcaacagct
cagcagccaacatccgtggccgcctccagcgtccgcctgggcctccccgtgcaagccaag
gtggtgccatcgacggctgcgcccgtcagtgccacggccacgctgccaggaggggctgtg
ctctcccacaccacggtatcagtagctacgacgagtgctcaaaatttgttcaagacaaca
gtagcaacgggaacttcatcttctcaacagcctgcagtgatcactggtggacagagccag
ggctcagcccagccccaaggtcagccccggctgccactcccccctcacacagcagcacag
gtaccagcacagcccctggtcattcccagctctcctgtgcctggaactacggttgtatcg
caggaaatgcaagagaatgtgaaaaaatgcaaaaactttttagctacccttataaaactt
gcttctcataactcaccatcaccagaaacatcccgcaatgtgaaagctctggttcaagat
ttgttggatgcaaagattgatccagaagaatttacaggccgccttcaaacagaactcaaa
tcatctcctcagccatatcttgtacctttccttaagaaaagtctacctgcactgagacaa
tctttactgaatagtcaacatttggttttgcaaggacagccgtctcagcagtcactccaa
caaaccaagctctcacaagttatacctcaatctgcctcgggaagcatttcctctgttgtc
acaacgcagacaataggaataaggcaaccaaacaacatttgcaccgtctctgtatcaaat
acagtgcagcctcctcaggttaaggtggtacagtcaaatcagagttctcaactgcagatt
atccagtcaacatctgctcaaactgtgaaacgaacccctgcttgccagactacccagatt
aggatgccagtggtaataactcagaccattagaccacaaggcacagtagggaaggcacca
acaatacaagccagtaaaagtcctgggggctttggtgttcaggtctctgcaaatcagaaa
aacaagctgaatgaccctggaggtggttctttcagagatgacgatgacatcaatgatgtt
gcctctatggctggtgttaatcttaatgaagaaagtgcccgaattatggctaccaactct
gacttggttggaacccagatccagtcctgtaaagatgaaccctttcttgctgctatacct
ctccataaacgcatacttgaaacggctaaaaaactaggaattactgatgtgccagctgag
gtcgttacttttatttcccatgcgacacagaacagattaagaacagtgatagaaaaagtg
acagtgataacccagcaccgaatggagtcatacaaagacgatgaatggtacgaacaagcc
acagatgtccgatcacagctgaagttctttgagcagttggagcgtttagaaaagcaaagg
aaagatgaacaagagagggaaatcttgctgaaggctgctaagagtcgctcaaggcaagaa
gacccagagcaagctagactgaaacaaaaagcaaaggagatgcagcagcaagagcttgcc
cagatgaggcagagggatgccaatctaacggcactggcagccatcggtccccggaagaaa
cggaagctggatgcacctggcctgctcaccataggaggagagggtgtgggggtgtgtgct
ggcagccaggccgggctgggcacggcctccccccggcagtacccccggcagaaaatcacg
cgcgtgaacctcagggacttcatcttctacatggagcaggagcgagaaatgagccattct
ctgctgctctaccgagctctgcttaaataa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (12)   
   KEGG ORTHOLOGY (1)   
   RefGene (8)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (21)   

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