KEGG   Corvus cornix (hooded crow): 104687942
Entry
104687942         CDS       T03546                                 
Symbol
RUBCN
Name
(RefSeq) LOW QUALITY PROTEIN: run domain Beclin-1-interacting and cysteine-rich domain-containing protein
  KO
K19330  run domain Beclin-1 interacting and cysteine-rich containing protein
Organism
ccw  Corvus cornix (hooded crow)
Pathway
ccw04140  Autophagy - animal
Brite
KEGG Orthology (KO) [BR:ccw00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04140 Autophagy - animal
    104687942 (RUBCN)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:ccw04131]
    104687942 (RUBCN)
Membrane trafficking [BR:ccw04131]
 Autophagy
  Other autophagy associated proteins
   Others
    104687942 (RUBCN)
SSDB
Motif
Pfam: RH_dom RUBC_PIKBD RUN
Other DBs
NCBI-GeneID: 104687942
NCBI-ProteinID: XP_039413145
Position
9:9870341..9896419
AA seq 1047 aa
MEIGPHAGHAESRKEHWKLLGNLKTTVEGLVSISNPNVWSKYGGLERLCRDMHSILYHGL
IHDKVCCRQKDYWQFVKDIRWLSPGSAHHLEKFISLQESGQRDPEGPGDQAIAQLWLQHS
LQCHCLSAQLRPLLGNRQYIRKFYTDTAFLLSDAHVTAMLQCLEAVEQNNPRLLAQIDTS
MLAGTSLPSLCASDPSAGTREMCDCSTEGHESRLPGALGCLDHFTESLLTRKSGNPSPVT
KSQSLTVLPASLCVPAATCTQQRCFGSFSSLQHPVSSGLADRRPVSSCGSSNSSQPQERC
PSTRSSSFSEGKSPLEQPGSVTHFHVPSPKDPFSPASEMSSSTTSQSEDTWTGSQDDAQS
DVNDGPEYLAIGNLGRRGRACSSASTSSTKSSSSKLFSSSSSQKLDSVSSLGEQGASGGG
SRGLSLLRRSSFSEGQSSAPQGILKKSHVRSHSDTNVTSGKLHGGLRDITIIIEDPVAES
HGDPSGGRGPVSASTQSSELSTPSSLYMEYDSGQYLSSGEGMFRRPSEGQSLISYLSEQD
FGSCADLEKENAHFSISESLIAAIELMKCNMMSRQLEEEEEDSDKEIQELKQKIRIRRQQ
IRTRHLFPTCQEIGSGSLVATDSGSQFSSHGSMRLSDSGSVEDVEEYEIRDGNDGSNLIQ
MSKNGLSVSMASLFSDADIKKNPDSSRKSFLSSDSISHSFLNSNSAEAVAMGLLKQFEGM
QLPAASELEWLVPEHDAPQKLLPIPDSLPISPDDGEHADIYKLRIRVRGNLEWXPPRPQI
IFNVHPAPARKVAVAKQNYRCAGCGIRTDPDYIKRLRYCEYLGKYFCQCCHENAQTVIPS
RILRKWDFSKYYVSNFSKDLLSKIWSDPLFNVQAINPALYQKVKALNQVRLLRIQLFHMK
NMFKTCRLAKDLLDSFDTVPGHLTEDLHLYSLSDFSAIKKGDLMPHLTELLKAGSLHIDK
CMLCQAKGFICEFCQNEDDIIFPFELNKCKTCEECKACYHKSCFKSARCPRCERLQARRE
LMAKQSMESYISDYEDELEQPEAVAAT
NT seq 3144 nt   +upstreamnt  +downstreamnt
atggagatcgggccccacgcggggcacgcggagagcaggaaggagcactggaagctcctt
ggcaacctgaagaccacagtggaaggtttggtgtccatcagcaacccaaatgtctggtcc
aagtatggcggcttggaacggctctgcagagacatgcacagcatcctctaccatgggctt
atccatgacaaggtgtgctgcagacagaaggattactggcagtttgtgaaggacattcgc
tggctgagtccgggctctgctcatcacctggagaagttcatcagcctgcaggagagcggc
cagcgtgaccctgagggcccaggggaccaggccattgcgcagctgtggctgcagcacagc
ctgcagtgccactgcctgtcggcgcagctgaggccgctcctggggaaccggcagtacatc
aggaagttctacacagatactgccttcctgctcagtgacgcacacgtcacggccatgctg
cagtgcctggaagctgttgagcagaacaaccccaggcttctggctcagattgacacctcc
atgctggccggcacgtcactgccgtccctgtgcgcgtcagacccttctgctgggacaaga
gagatgtgtgattgcagcactgagggacatgagagccgtctgccgggagcgctgggctgc
ctggatcatttcactgagagcctgcttactaggaagagtggcaatccatctccagtgacc
aagagtcagagcctgactgtcctccctgcatccctatgcgtccctgctgccacctgcaca
cagcagcgctgctttgggtccttttccagcctccaacatccagtctcctctggcctcgca
gacaggagaccagtgagttcctgtggcagctccaactccagccagccccaggagcgctgc
ccatccactcggtcctcctccttcagcgagggcaagtcccctctggagcagcctggctct
gtcacccacttccacgtcccctcacccaaagaccccttctctccagccagcgagatgagc
tccagcaccaccagccagagcgaggatacctggacagggagtcaggatgatgcacagagt
gatgttaatgacgggccggagtacctggccattggcaacttgggacgccggggccgggct
tgcagcagcgccagcaccagcagcaccaagagcagtagctctaaactcttctcctccagc
agctcccagaagctggactcagtatcatccctgggggagcagggagcaagtggaggtggc
agcaggggcctgagcctgttgcgtcggtccagcttctcggagggacagtcatcagctcca
cagggcatcctcaagaagagccatgtgcgctcacactctgacaccaacgtgacttccgga
aagttgcacggaggcctcagggatatcaccattataatagaagatccagtggcagagtcc
catggtgatccaagtggagggagagggccggtctctgcttccacgcagagcagtgaactg
agcacacccagctccctctacatggagtatgactctggacagtacctgagttcgggggaa
gggatgttcaggagaccttcagaagggcagtccctcatcagctacctctctgagcaggac
tttggcagctgtgcagacctggagaaggagaatgcccacttcagcatctcagagtccctg
atcgctgccattgagctgatgaaatgcaacatgatgagccggcagctggaggaggaggag
gaagacagtgacaaggagatccaggagcttaaacaaaagattcgcattcggcgccagcag
atccgcaccaggcacctgttccctacctgccaggagataggctcaggcagtctggtggcg
acagacagcgggtcccagttcagctcccacggctccatgcggctctctgactctggctct
gtggaggatgtggaagagtacgagatccgagatggtaacgatggatctaacctgattcaa
atgtccaagaacggcctctcagtgtcaatggcttccttgttctcagatgcagacatcaag
aagaacccagactccagcaggaagtcctttctctcctcggactccatatcccactccttc
ctcaattcaaactcggcagaggctgtggccatgggcctgctgaagcagtttgagggcatg
cagctcccagctgcctctgaattggagtggctggtccctgagcatgacgccccgcagaag
ctcctgcccatccctgactctctgcctatctctcctgatgatggagaacacgccgacatc
tacaagctgaggattcgggtgcgcggaaacctggagtggnccccgccacgaccgcagatc
atcttcaatgttcacccagccccagcgaggaaggtggctgtggccaagcagaattaccgg
tgtgcaggttgtggcatccggactgatcctgattacatcaagcggctgcggtactgtgag
tacctgggcaagtatttctgccagtgctgccacgagaacgcccagaccgtcatccccagc
cgcatcctgcgcaagtgggacttcagcaagtactacgtgagcaacttctccaaagacctg
ctgagcaagatctggagtgacccactcttcaacgtgcaggctatcaatcctgccctctac
cagaaagtgaaggctctcaaccaagtgcggctgctgagaatccagcttttccacatgaag
aacatgttcaagacgtgccggctagctaaagacctcctggactcctttgacacagtgcct
ggccatttgacagaggatttgcacctctactcactgagtgacttcagtgccatcaagaaa
ggggacctgatgcctcacctgacagagctcctgaaggcaggcagcctgcacattgacaag
tgcatgctgtgccaagccaaaggcttcatctgtgagttctgccagaatgaggatgacatc
atcttcccctttgagctcaacaagtgcaagacatgtgaagagtgcaaagcctgctaccac
aaatcctgcttcaaatccgcccgctgtccccggtgcgagcgtctccaagcccggagagag
ctgatggccaagcagagcatggagtcctacatctcggactacgaggatgagctggagcag
ccggaggcagtggcagccacatga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (27)   
   KEGG ORTHOLOGY (1)   
   RefGene (23)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (3)   
   Pfam (3)   
All databases (36)   

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