KEGG   Corvus cornix (hooded crow): 104688240
Entry
104688240         CDS       T03546                                 
Symbol
TNC
Name
(RefSeq) tenascin isoform X2
  KO
K06252  tenascin
Organism
ccw  Corvus cornix (hooded crow)
Pathway
ccw04510  Focal adhesion
ccw04512  ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:ccw00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    104688240 (TNC)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    104688240 (TNC)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   00536 Glycosaminoglycan binding proteins [BR:ccw00536]
    104688240 (TNC)
Glycosaminoglycan binding proteins [BR:ccw00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   104688240 (TNC)
SSDB
Motif
Pfam: fn3 Fibrinogen_C EGF_2 EGF_Tenascin Pur_ac_phosph_N EGF Interfer-bind NDNF hEGF Big_5
Other DBs
NCBI-GeneID: 104688240
NCBI-ProteinID: XP_020440071
Position
17:8446682..8518708
AA seq 1776 aa
MGLPSWVLACAILALLSQHVTGGLIKRIIRQKRETGLNVTLPEDNQPVVFNHVYNIKLPV
GSLCSVDLDTASGDADLKAEIEPIKNYEEHTVNEGNQIVFTHRINIPRRACGCAAAPDIK
DLLSRLEELEGLVSSLREQCASGAGCCPNSQAVEGRLDTTPYCSGHGNYSIEICGCVCEP
GWKGPNCSQASCPSDCNDQGKCVDGLCVCFEGYTGPDCSQELCAQGCGTHGRCVGGRCLC
HEGFVGEDCSVPLCPHNCHGRGRCVDSECVCDEGYTGEDCSELICPNDCYDRGRCVNGTC
FCEEGFTGEDCGELTCPNNCHGNGRCENGLCVCYEGFVGDDCGQLRCPNDCHNRGRCVGG
RCVCHEGYLGEDCAELRCPNDCHNRGRCENGQCVCHEGFIGEDCGELRCPNDCHSRGRCE
NGQCVCHEGFTGDDCGQLRCPSDCHNRGLCVNGQCVCDEGYTGEDCAELRCPHDCHNRGR
CVEGQCKCDNGFTGEDCGELACPNDCHGRGRCVDGRCVCHEGFVGEDCRERSCPSDCHNA
GRCVDGRCVCEDGYIGDDCSDVSPPTELTVTNVTDKTVNLEWKHENLVNEYLVTYVPTSS
GGLDMQFTVPGNHTAATIHELEPGVEYFIRVFAILKNKKSIPVSARVATYLPAPEGLKFK
SVRETSVQVEWDPLNFSFDGWELVFHNMKKDDNGDITSSLKRPETSYMQPGLAPGQQYNV
SIHIVKNNTRGPGLSKVITTKLDAPSQVEAKDVTDTTALITWSKPLAEVEGIQLTYGPKD
IPGDRTTIDLSEDENQYSIGNLRPHTEYEVTLVSRRGDMESDPVKEVFVTDLDAPRNLKR
VSQTDSSITLEWKNSHANVDNYRIKFAPISGGDHVEITVPKGSQATTRATLTGLRPGTEY
GIGVTAVRNDRESAPATINAGTDLDNPKDLEVSDPTETTLSLRWRRPVAKFDRYRLVYTG
PSGKKSEVEVPVDSTSFLLRGLDAGTEYTISLQAEKGRHKSKPTTVKGSTEEEPELGGLS
VSKTGWDGFQLTWTAADGAFENFIIQVQESGNPEETRNVTVPGALSSVNVTGLKANTPYN
ITLQGVTRGYRTKPLSLETTTGEQPGVAELMVSDITPESFNLSWTASNGDFDIFTIEIID
SNRLLEPMEFNVSGNSRTAHISGLSPSTDFIVYLSGISRGFRTQAISAAATTEAEPEVDN
LLVSDATPDGFRLSWTADDGVFNSFVLKIRDTKRKSDPLELIVPGHERTQDITGLKEGTE
YEIELYGISSGQRSQPVNAVASTVVGSPKGISFSDITENAATVSWTPPHSRVENFRISYV
PVTGGTPNVVTVDGSKTRTKLVKLVPGVDYNVSIISVKGFEESEPVSGTLKTALDSPSGL
VVVNITDSEALATWQPAIAAVDNYVVSYSSEEEPEVTQMVSGNTVEYDLKGLQPATEYTL
SVHALKDTQRSETLSTHFTTGLDAPRDLSATEVQSEAAGISWRPPRAPVTGYLLIYESID
GRVKELILNPETTSYSLTELSPSTQYTVKLHALSGALRSKTIQTIFTTTGLLYPYPKDCS
QALLNGEATSGLYTIYLNGDKAQPLQVFCDMGEDGGGWIVFLRRQNGKQDFYKNWNTYVT
GFGDPKDEFWIGLENLHKITSQGQYELRVDLRDKGDAAYAVYDRFSVGDAKSRYRLRVDG
YSGTAGDSMTYHNGRSFSTFDKDHDSAITNCALSYKGAFWYKNCHRVNLMGRYGDNSHSQ
GVNWFHWKGHEYSIQFAEMKLRPSSFRNLEGRRKRA
NT seq 5331 nt   +upstreamnt  +downstreamnt
atgggactccccagctgggtcttggcctgcgccatcctcgctttgctgtcccagcacgtc
actgggggactcatcaagagaattatcaggcagaagagggagactgggctgaacgtgacc
ttgccagaggacaaccagcctgtggtttttaaccacgtctacaacattaagctgcccgtt
ggctccctctgctctgtggacctggacacggcgagcggcgacgctgacctgaaggcggaa
attgagcccatcaagaactacgaggagcacacggtgaatgaggggaaccagattgtcttc
actcacaggattaacattccccgccgggcttgtggctgtgcagctgccccagacattaag
gatctgctgagcagactagaggagctggaggggctggtctcctccctgagggagcagtgt
gccagcggggctggatgctgtcctaattcccaggcagtagaaggtcgcctggacaccaca
ccctattgcagcgggcacggcaactacagcatcgagatctgcggctgcgtctgcgagccg
ggctggaagggccccaactgcagccaggcctcgtgtccctccgactgcaacgaccagggc
aagtgcgtggacgggctgtgcgtgtgcttcgagggctacacgggcccggactgcagccag
gagctctgcgcccagggctgcggtacccacgggcgctgcgtgggcgggcgctgcctgtgc
cacgagggctttgtgggtgaggactgcagcgtgcccctgtgcccccacaactgccacggc
cgcgggcgctgcgtggacagcgagtgcgtgtgcgacgagggctacaccggcgaggactgc
agcgagctcatctgccccaacgactgctacgaccgcgggcgctgcgtgaacggcacctgc
ttctgcgaggaggggttcaccggcgaggactgcggggagctcacctgccccaacaactgc
cacggcaacgggcgctgcgagaacgggctgtgcgtgtgctacgaggggtttgtgggcgac
gactgtggccagctgcggtgtcccaacgattgccacaaccgcgggcgctgcgtgggcggg
cgctgcgtgtgccacgaggggtacctgggcgaggactgtgcggagctgcggtgtcccaac
gattgccacaaccgcgggcgctgcgagaacgggcagtgcgtgtgccacgagggcttcatc
ggagaggactgcggggagctgcgctgccccaacgactgccacagccgtgggcgctgcgag
aacgggcagtgcgtgtgccacgagggcttcaccggggacgactgcggccagctgcggtgc
cccagcgactgccacaaccgcgggctgtgcgtcaacgggcagtgcgtgtgcgatgagggg
tacacgggcgaggactgtgcggagctgcgctgcccccacgactgccacaaccgtgggcgc
tgcgtggagggacagtgcaagtgtgacaatggcttcacaggagaggactgcggagagctg
gcctgccccaacgactgccacgggcgtgggcgctgcgttgacgggcgctgcgtgtgccac
gagggcttcgtgggcgaggactgccgggagcgctcctgccccagcgactgccacaacgcg
gggcgctgcgtggacgggcgctgtgtctgcgaggatgggtacatcggggacgactgctct
gatgtgtctcctccaactgagctgactgtgaccaacgtgacggataaaactgtcaatctg
gagtggaagcatgagaacctcgtcaatgagtacctcgtcacctacgtccccaccagcagt
gggggcttggacatgcagttcaccgtgccaggaaaccacacagccgccaccatccatgag
ctggagccgggggtggagtacttcatccgtgtctttgcaatccttaaaaacaagaagagc
attccagtcagcgccagggtagccacatatctgcctgctccagaaggtctgaaattcaaa
tctgttcgggaaacatccgtccaggtggagtgggaccctctgaacttttcttttgatggc
tgggagctggtcttccataatatgaaaaaggatgataatggtgacataaccagcagcttg
aaaaggccagagacatcctacatgcagccaggtttggcacctgggcaacagtacaatgtg
tccatccatatagtgaagaacaacaccagaggaccaggactgtccaaagtcatcaccaca
aagcttgatgcccccagccaggtggaggccaaagatgtcaccgacaccaccgctctcatc
acgtggtccaaacccttggctgaagttgagggcatacagctcacctatggccccaaggac
attccaggggacaggacaaccatcgacctctctgaagacgagaaccaatattccattggg
aacctgaggccgcacacagagtatgaggtgacgctcgtctctcgtcgaggggacatggaa
agcgaccctgtgaaggaagtctttgtcacagacctggatgctccaaggaacctgaagcgg
gtgtcccagaccgacagcagtatcaccttggagtggaagaacagccacgccaatgtcgat
aattaccgaattaagtttgcccccatctctggtggggaccacgtggagatcacggtgccc
aagggcagccaggccacaaccagagctacactcacaggtttgaggcctggaactgaatat
ggcattggagtgacagcagtgaggaacgacagggaaagtgctcctgctaccatcaatgct
ggcactgatctcgataaccccaaggacttggaagtcagcgaccccactgaaaccaccttg
tcccttcgctggagaaggccagtggccaagtttgaccggtaccgcctcgtttacaccggt
ccctccgggaagaagagcgaggtggaggttcctgtggacagcacctccttcctgctgcgg
gggctggatgcaggcacggagtacaccatcagcctgcaggcagagaagggcaggcacaag
agcaaacctaccactgtcaagggttccacggaggaggaacctgagctgggaggattatca
gtatcaaagactggctgggatggtttccagctcacctggacagcagccgacggggccttt
gagaactttatcattcaggtgcaggagtctggcaaccccgaagaaacccgaaatgtcaca
gtcccgggggcactgagctctgtgaatgtcaccggcctcaaggccaacactccttataac
atcacccttcagggggtcactcggggctacaggaccaagcccctttctcttgagaccacc
acaggagagcagcccggcgtcgctgagctaatggtttccgacattactcccgaaagcttc
aacctctcctggacagcctccaacggggactttgacatctttaccattgaaattattgat
tctaacaggttgctggagcccatggagttcaatgtctcaggcaactcaaggactgctcat
atctcagggctttctcccagcactgatttcattgtctacctctccgggatctctcgcggg
ttccgcacacaggcaatcagtgctgcagctaccacagaagcagaacccgaggtcgacaac
cttctggtttcagacgccactccagacggattccgtctctcctggactgcagatgacggg
gttttcaacagctttgttctaaaaatcagggacaccaaaaggaaatctgacccactggag
ctgatagtgccaggccatgagcgcacccaggacataacagggctgaaagagggcactgaa
tatgagattgagctctatggaattagcagtggacaacgttcccagcccgtaaatgcagta
gcatccacagtcgttggctctcccaagggaatttctttctctgacatcacggaaaacgcc
gccacagtcagctggaccccccctcactcccgtgtggaaaacttccggatctcctacgtc
cccgtcacgggaggtactccaaatgttgtcacagtcgacgggagcaagacaaggaccaag
ctggtgaagttggtcccaggtgtggactacaatgtcagcatcatctctgtgaaaggcttt
gaggaaagtgagcccgtctctggcaccctgaaaacagctttggacagcccgtcaggcctg
gtagtggtgaacatcacagactcagaggctctggcaacctggcagccagcaattgcagct
gtggataactatgtggtgtcctactcttctgaggaagagccagaggtgactcagatggtc
tcagggaacaccgtggagtatgacctgaaggggctccagcctgccaccgagtacacgctg
agcgtccacgcgctgaaggacacgcagaggagcgagaccctctccacccacttcaccaca
gggctggatgctccaagagatttgagtgccactgaggtgcagtcagaagcagctgggata
agctggaggcctccccgtgctccagtcactggatatcttctgatctatgaatccattgat
ggcagagtaaaggaactcatcctaaaccccgagacaacatcctacagcctgacagagctg
agcccctccacccagtacacagtgaaactgcacgccctgagtggagccctgaggagcaaa
accatccagaccattttcaccacaactgggctcctctatccctaccccaaggactgctcc
caggccctcctgaatggagaagccacctctgggctctacacaatttacctgaacggggac
aaggctcagcctctgcaagtgttctgtgacatgggcgaggacgggggaggatggatcgtg
ttcctgaggcgtcagaatggaaagcaagatttctacaagaactggaatacttacgtgaca
gggtttggagatcctaaggatgaattctggataggtctggagaacctgcacaaaatcact
tctcagggccagtacgagctgcgggtggatctgagggacaagggggacgcggcctacgcc
gtgtacgaccgcttcagcgtcggagacgccaagagccggtaccggctgcgggtggatggc
tacagcggcacagcaggtgactccatgacctaccacaatggaaggtccttctccaccttc
gacaaggaccatgactctgccatcaccaactgtgctctgtcgtacaaaggagctttctgg
tacaagaactgtcaccgagtcaacctgatgggcagatatggtgacaacagccacagtcag
ggcgtcaactggttccactggaagggccacgagtattccatccagtttgcagagatgaag
ctgagaccctccagcttccggaacctggaagggcgccggaagcgagcgtag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (60)   
   KEGG ORTHOLOGY (1)   
   RefGene (56)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (4)   
   RefSeq(pep) (4)   
DNA sequence (4)   
   RefSeq(nuc) (4)   
Protein domain (10)   
   Pfam (10)   
All databases (83)   

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