KEGG   Corvus cornix (hooded crow): 104690884
Entry
104690884         CDS       T03546                                 
Symbol
RFC1
Name
(RefSeq) replication factor C subunit 1 isoform X1
  KO
K10754  replication factor C subunit 1
Organism
ccw  Corvus cornix (hooded crow)
Pathway
ccw03030  DNA replication
ccw03410  Base excision repair
ccw03420  Nucleotide excision repair
ccw03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:ccw00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    104690884 (RFC1)
   03410 Base excision repair
    104690884 (RFC1)
   03420 Nucleotide excision repair
    104690884 (RFC1)
   03430 Mismatch repair
    104690884 (RFC1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ccw03032]
    104690884 (RFC1)
   03400 DNA repair and recombination proteins [BR:ccw03400]
    104690884 (RFC1)
DNA replication proteins [BR:ccw03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    104690884 (RFC1)
DNA repair and recombination proteins [BR:ccw03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     104690884 (RFC1)
SSDB
Motif
Pfam: RFC1 BRCT AAA AAA_22 AAA_14 PTCB-BRCT Rad17 BRCT_2 AAA_5 AAA_30 RuvB_N AAA_17 AAA_7 AAA_18 RNA_helicase AAA_16 AAA_33 nSTAND3 TIP49 AAA_19
Other DBs
NCBI-GeneID: 104690884
NCBI-ProteinID: XP_039407227
Position
4:50144518..50178774
AA seq 1116 aa
MDIRKFFGVVPPGKRQECESVKKSERIKNGEGPSSGKKREKEAKVNNSPSEDDSKQKRTK
KKRRIIYDSDSEEEVSSVKKSKKSPEKKAATSKLGKVLKQDPVVYISETDEEDDFVNRRI
SLKPKENGTSAVGCPGTNIVKKGEVKPQAKSKPLSPVKQTPTSALDYFGTTSVQRSEKKL
VASKRKEPSQSRDSTLDDEAIARQLQLEEDSELERQLHEDEEFARTLAMLDETPQKKKAR
KDTEGEQTVLSISSSPNRTAGYKQSERVKATDSAGAAKNYSAKRQNKSEQLKEIAEKERG
AQNSLSREKAALGKEERTPPKKEKVSPKKTESISPEDSEKKRNYQAYRSFLNREGPKALG
SKEIPQGAENCLEGLTFVITGVLECIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDCG
QSKREKASTLGTKVIDEDGLFDLIRTMPGKKSKYELAAETEAEKVESRPKKTPQKTEAGK
RNFSPYKREANNKYKSTPEKGDTARSVKRETTAIRKLTDFKHHTVEEKEAPKPKGNLVSE
VNEDGTEKLLWVDKYKPVSLKAIIGQQGEQSCANKLLRWLRNWHKNTLEDGQAKPSKTGS
KDDGTSFKAALLSGPPGVGKTTTAALVCKELGYSYVELNASDTRSKNSLKEVVAESLNNT
SIKDFYSGASSSVSGKHVLIMDEVDGMAGNEDRGGIQELIALIRHTKIPIICMCNDRNHP
KIRSLVHYCLDLRFQRPRLEQIKGAMMSIAFKEGLKIPPPAMQEIILAANHDIRQVLHNL
NMWCARDKSLTYDEAKTDASRAKKDIKLGPFDVVRKVFATGEEAVRMSLIDKSDLFFHDY
SLAPLFVQENYVHVKPAAAGGNLKKHLVLLSRAADSICDGDIVDKQIRSKQNWNLLPTQA
IYASVLPGELMRGYMSQFPVFPSWLGKFSSTGKHDRIIQELAMHMSLRTQTCKRTVNMEY
LSYLRDALVQPLKDFGADGVQQAITFMDSYCLMKEDVENIMEISMWGGKPSPFSKLDSKV
KAALTRAYNKEAHLTPYSLSSVKASKRQSGSAVTLDLSEDLNVEEMQSDEDEQDTVDSDA
MIKQKKVKSSKLTKKEKNEETTKKEGKRKEKTRHLE
NT seq 3351 nt   +upstreamnt  +downstreamnt
atggatatccggaaattctttggtgttgtaccacctggaaagcgacaagaatgtgagtct
gtgaaaaagagtgaaagaattaaaaatggtgaaggaccctcaagtgggaagaaaagggaa
aaggaggctaaggtgaataattcacccagtgaagacgattccaaacaaaagcggacaaaa
aagaagagaagaataatctatgattcagattcagaagaggaggtgtcgtcagtgaaaaaa
tccaagaagtcacctgagaaaaaagcagctacttcaaaacttggtaaagttctaaagcag
gatcctgttgtttatatttcagagacagatgaagaggatgattttgtcaatagaagaatt
tccctgaaaccgaaggagaatgggacatcagccgttggctgtccaggaacaaatattgtc
aaaaaaggagaggtcaaaccacaagctaaaagcaagcccctgtctccagtgaaacagact
cccacctctgcacttgattactttgggacaacgagtgtccaacggtcagaaaagaaactg
gtagcaagtaaaaggaaagagccttcacaaagcagagatagcacactagatgatgaggcc
attgctaggcaactgcagcttgaagaagattcagagctggagagacagctgcatgaagat
gaagaatttgctagaactctggccatgttggatgaaacaccgcagaagaaaaaggctcgg
aaagatacagaaggagagcaaacagtactgagcatcagtagcagccctaataggacagca
ggatataagcagtcagaaagagtgaaggcaacagactcagctggtgcagccaagaattat
tctgcaaagcgtcaaaataaatctgaacagttgaaagagattgctgaaaaagaaagaggt
gctcaaaattcactatcgagagaaaaagcggctttggggaaagaagagaggacaccacca
aagaaggagaaagtctctcccaagaagactgagtctataagtcccgaggactctgaaaag
aagcgaaactaccaagcttaccgaagcttccttaatcgtgagggtccgaaagcactgggt
tccaaagagatacctcagggagctgaaaactgcttggaaggcctgacatttgtaattacg
ggtgttctggagtgcattgaaagagatgaggccaagtctctgattgaacgttacggaggc
aaagtaactggcaatgtcagcaagaagacaaattacctggtgatggggcgagactgcggc
cagtccaaacgtgagaaggcatcaactttaggtacaaaagttattgatgaggatggtctg
tttgatcttattcgaactatgccaggcaaaaagtccaaatatgagctggcagctgaaaca
gaggcagagaaagtggagtcaagacctaaaaagacacctcagaaaactgaagctggaaaa
agaaattttagcccctataaaagggaagctaataataagtacaagtctactcctgaaaaa
ggagatactgccagatctgtcaagagagaaaccactgctattcgaaagcttacggacttt
aaacatcacacagtagaggagaaagaagccccaaaacctaaggggaacttggtttctgag
gttaatgaagatggtacagagaaattgttatgggtagataaatacaagcctgtatctctt
aaggcaattattggacagcagggtgagcaaagctgtgccaataaactgctccgatggctc
agaaattggcacaagaataccttggaagatggacaagcaaaacccagtaaaactggaagc
aaagatgatgggacaagttttaaagcagctttactttctggtccacctggagttggtaaa
actactacagctgctttggtttgtaaggaactggggtatagctacgtggagctgaatgcc
agtgacactcgcagcaagaacagtctaaaggaagtagttgctgaatcacttaacaacacc
agcatcaaagacttctattctggtgcatcctcatcagttagcgggaaacatgtattgatc
atggatgaagtggatggtatggcaggcaatgaagacagaggagggattcaggagctgatt
gctttgatccgacacacgaagatacccatcatttgtatgtgcaatgatcgcaaccatcct
aaaatccgctccttggtccactactgcttggatcttcgttttcagagacctcgtctagaa
cagatcaagggtgccatgatgtctattgcatttaaagaaggtttaaaaattcccccacct
gctatgcaagagataatcctggcagcaaaccatgacatcagacaggttttacataatctt
aatatgtggtgtgcaagagataaatcattgacttatgatgaggctaaaacagatgccagc
agagccaaaaaggacatcaaattgggccctttcgatgttgtccggaaggtttttgctact
ggagaggaggctgttcgtatgtctcttatagacaaatcagatcttttcttccatgattat
tcgctagctcctctctttgtacaagagaactacgtgcatgtgaaaccggctgctgctgga
ggtaatttaaaaaagcacttggtgctcttgagtagagcagctgatagtatatgtgatggt
gatatagtggacaagcagattcgtagcaagcagaactggaatcttcttccaacacaggct
atttatgccagcgttctccccggggagctgatgagaggttacatgtcccagtttcctgtc
tttcccagctggctggggaaattttcatccacaggcaaacatgatcgtatcattcaagaa
ctggcaatgcacatgagtctcagaactcagacatgcaagaggacagtaaatatggaatat
ttgtcatatttgcgggatgcacttgtccagcccttgaaagactttggagcagatggtgta
caacaagctataacatttatggactcctactgcttgatgaaagaagatgttgaaaatatc
atggaaataagcatgtggggaggcaaacccagtcctttttcaaagctggattccaaggtc
aaagcagctttgacacgtgcctacaacaaagaggcacatctgactccatattcacttagt
tctgtcaaggcatctaaaaggcagtcgggatctgcagtgactttagatctgagcgaagac
ttgaatgtggaagagatgcagtctgatgaggatgagcaagatactgttgacagtgatgca
atgattaagcaaaaaaaggtgaagtcctccaagctgacaaaaaaagagaaaaatgaagaa
acaacaaaaaaagaagggaaaagaaaagagaaaacaagacatttagagtaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (4)   
   KEGG PATHWAY (4)   
Genome (1)   
   KEGG GENOME (1)   
Gene (19)   
   KEGG ORTHOLOGY (1)   
   RefGene (15)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (20)   
   Pfam (20)   
All databases (51)   

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