KEGG   Corvus cornix (hooded crow): 104692053
Entry
104692053         CDS       T03546                                 
Symbol
USP28
Name
(RefSeq) ubiquitin carboxyl-terminal hydrolase 28 isoform X1
  KO
K21122  ubiquitin carboxyl-terminal hydrolase 28 [EC:3.4.19.12]
Organism
ccw  Corvus cornix (hooded crow)
Brite
KEGG Orthology (KO) [BR:ccw00001]
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01002 Peptidases and inhibitors [BR:ccw01002]
    104692053 (USP28)
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:ccw04121]
    104692053 (USP28)
Enzymes [BR:ccw01000]
 3. Hydrolases
  3.4  Acting on peptide bonds (peptidases)
   3.4.19  Omega peptidases
    3.4.19.12  ubiquitinyl hydrolase 1
     104692053 (USP28)
Peptidases and inhibitors [BR:ccw01002]
 Cysteine peptidases
  Family C19: ubiquitin-specific protease family
   104692053 (USP28)
Ubiquitin system [BR:ccw04121]
 Deubiquitinating enzyme (DUB)
  Ubiquitin-specific proteases (UBPs)
   UBP/USP
    104692053 (USP28)
SSDB
Motif
Pfam: UCH IFT46_B_C DUF3322
Other DBs
NCBI-GeneID: 104692053
NCBI-ProteinID: XP_039420694
Position
24:complement(284292..308702)
AA seq 1186 aa
MSTAGPTARHGWTRPRRGRRARNRSGRACALCGDGAAAGGLMTAELWARGGGGEDCQVLL
NQMKEITGIQDSAFLLAALKAADGDFMEAVTFLTEDPAPEPVQDPAAAEPSAWEGSAVGK
QLPQDVSAAPAPHNQDNLRTANTVRSLESPKAPAAERDAAERPQDTHSAENKYRSKRKRC
EMLSLWVESPKQNDWRRAGDWPVGMKNIGNTCWFSAVIQSLFQLPEFRRLVLGYSLPQNV
LESCRHTGKRNIAFMQELQCLFALMLGTWRKFVDPSAALELLRDVFRSAEQPQQDVSEFT
HKLLDWLEDAFQLTVNATSPGDKSENPMVQLFYGTFLTEGVHEGNTFSKIETFGQYPLQV
NGYQNLNECLEGAMVEGEMDEATTSQSVKYGQERWFTKLPPVLTFELSRFKFNQSLGQPE
KIHTKLEFPQTIYMDRYLYCNKDLIQMKREEMKRSKEKMVTLQQKLERYMEYGSGPARFP
LPDMLQYVLEFIVTKPAVAVSSAQSSQTTLPHSPAKPHVLDVLSQPNGIQERTDIRTEDE
AFLVANSLLQQNSSMELQPPVSPAELSERPAPHVVSEEEMKLVQTCLQRWRNEIEQDVQD
LKESIARINLSIEQMYCDPLLQQVPYRLHAVLVHEGQANAGHYWAFIYDQPRKRWLKYND
IWVTESSWEELERESFGGLRSASAYCLMYISEQVSHVGADEDEGPEARQFQKEVEALSPE
LRHYIQEDNWRLEQEAEEWEEEQSCKIPQMEPSPTSELQDLSSESGPEQSSVCEQSVRSL
SSEHARIAKEQTAKAIANTADAYEKNGVEAALCERKEVEPLKAHPGEASPTVQAEQPQDT
QEAEAAAQTSSQVSEVEIPSVGKIPVRSDADGYNEEVMLSPAMQGVILAIAKARQTFDRD
GSEAGLVKAFHEEYSRLYLLSKETPTPQNDARLQHVLIYFLQNNAPQQVVERTLLEQFAD
KNLSYDERSISIMKVARAKLSEIGPDDVDMEEYKRWHEDYSLFRKVSIYLLTGLELYQNR
KYQESLTYLVYAYQSNTKLLLKGTNRGVSESLIALYRRKCLLKLNEVAASLFVSCEEAHV
SEGVNILNELIIPCMHLMNNFEISKEDLDAIEVMRNRWCSYLGREDMDAKLQMKLGELLP
RLLDGSTEVIVLKEPPKIRPNSPYDLCSRFAAVMESIHGASTVTVK
NT seq 3561 nt   +upstreamnt  +downstreamnt
atgagcacggccggacccacggccaggcacggctggacacgaccccggcgggggcggcgc
gcccggaaccggagcggccgcgcgtgcgcgctgtgcggcgacggcgccgctgccggcggc
cttatgacggccgagctgtgggcccggggcggcggcggcgaggattgccaggtgctctta
aaccaaatgaaagagatcacaggaattcaggattcagcattcctgcttgccgctctaaag
gctgctgatggagacttcatggaagcagtcaccttcctgacggaggaccctgctccggag
ccagtgcaggacccagccgctgcagagccatccgcctgggaagggagcgcagtgggcaaa
caactcccacaggatgttagtgctgcacctgcccctcacaaccaagacaacctccgcaca
gccaacactgtcagatcactggagtcaccaaaagctccagctgcagaaagggatgcagct
gaaagaccacaggacacccattccgctgaaaacaaataccgctccaaaaggaaacgctgt
gaaatgctctctctgtgggtagagagccccaagcagaatgactggagaagagcgggtgac
tggcctgttggaatgaaaaatattggaaacacgtgttggtttagtgctgttatacagtct
ctgtttcagttgccagaattccggaggctggtccttgggtactccctgccacagaatgtg
cttgaaagttgtcgtcacactggaaaaagaaatattgcgttcatgcaagaacttcagtgc
ctgtttgcattaatgctggggacgtggcgtaagttcgtagacccttctgcagcactggaa
ctcttgagggatgtgtttagatccgctgaacaaccgcagcaagacgtgagtgaatttaca
cataaactactggactggctggaggacgcattccagctcactgtgaatgccacgagccct
ggggacaaatccgaaaacccaatggtgcagctcttctacgggactttcctgactgagggt
gtccatgagggcaacaccttttccaagattgagacctttggtcagtatccccttcaggta
aatggttaccagaacttgaatgagtgcttggaaggagccatggtggagggagagatggat
gaggcaacaacatctcagtcagtgaagtatggacaggagcgctggtttacaaaactgcca
ccagttctgacctttgaactctcccgatttaagttcaatcagtcactaggacagccagag
aaaattcacaccaagctagagtttccccagactatatatatggacaggtacctctactgc
aataaagatcttattcagatgaaaagagaggaaatgaagagatcgaaggagaaaatggtg
actctgcagcagaaactggaaaggtacatggaatatggctctggcccagcccgctttcca
ctacctgacatgctgcagtacgtgctcgagttcattgttacgaagccagctgtggctgtt
tcctctgctcagagctctcaaacaacactaccgcactccccagccaagcctcatgttttg
gacgtgctttcacagccaaatggcatacaagagaggaccgatattaggactgaagatgag
gctttccttgtggcaaattctttgctgcagcagaactccagtatggagctccagcctcct
gtttcaccagcagaactgtctgaacgtccagctcctcacgtggtctccgaggaagagatg
aagctggttcagacatgtctgcagcgatggagaaacgagatcgaacaagacgtgcaagat
ctgaaggagtctattgccagaatcaacctgtccatcgaacaaatgtactgtgaccctctc
ctccaacaggttccctatcgtttgcatgcagtcctggtccatgaagggcaagcaaatgct
gggcactactgggccttcatatatgaccagcctcggaaaagatggctcaaatacaatgac
atctgggtgacagagtcatcgtgggaagagctggagcgagagtcatttggaggcttgagg
agtgccagtgcctactgcctgatgtacatcagtgaacaggtgtcccatgttggtgcagat
gaggatgagggcccagaggctagacagttccagaaggaagtggaagctttgtccccagaa
ctgagacactacatccaggaggacaactggcgcctggagcaggaggcagaggagtgggag
gaggagcaatcttgtaagattcctcagatggagccttcgcctacttctgaattgcaggac
ctctcctctgagtcaggaccagagcaatcgtcagtctgtgagcagagcgtgcgctccctg
tcctcagagcatgccaggattgccaaggagcagactgccaaggccattgccaacactgcc
gatgcctacgagaagaacggtgtcgaggcagctctgtgcgagcgcaaggaggtagagccg
ctgaaggctcatccgggagaagcatcccccacagttcaggcagagcagccccaggacact
caggaagcagaggctgctgcccaaactagctcacaggtctctgaagtggaaatccccagt
gtggggaagattcccgttagatccgatgcagatggatataatgaggaggtgatgctgagt
ccagccatgcaaggtgtcatcctggctattgcaaaagcccgccagacctttgatcgtgat
gggtctgaagcagggcttgttaaggcattccatgaggagtactctcgcctgtacctgctt
tccaaagagaccccaaccccccagaacgatgcccggttgcagcacgtgctcatttacttc
ctgcagaacaatgctccacagcaggtggtggaacggaccctccttgagcagtttgcagac
aaaaacctcagctatgatgaacggtccatcagcatcatgaaggtggcacgggcaaagctg
agtgaaatcggtcctgacgatgttgacatggaggagtacaagagatggcacgaagactac
agcctttttcgcaaggtgtccatttacctgctgacggggttggagctctaccagaataga
aagtatcaggaatcactcacctacctggtctacgcctaccaaagcaacaccaaactgctg
ctgaagggaaccaaccgaggcgtgagcgagtcactgatcgccttgtacagaaggaagtgt
ctcctgaagctgaacgaggtggcagcttctctttttgtcagctgtgaagaagctcatgtg
tcagagggtgtgaacatcttgaatgagctgatcatcccctgcatgcatctcatgaacaac
tttgagatctccaaagaggacctggatgccattgaggtcatgagaaaccgctggtgctcc
tatttgggacgagaagacatggacgcaaagctgcagatgaagctgggcgagctgctgccc
cggctcctcgacggctccactgaggtcattgtgctgaaggagcccccgaagatccgaccc
aattccccttacgacctatgcagccgcttcgcggccgtgatggagtccattcacggggcc
tcaaccgtgaccgtgaaatag

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Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (11)   
   KEGG ORTHOLOGY (1)   
   RefGene (7)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (4)   
   RefSeq(pep) (4)   
DNA sequence (4)   
   RefSeq(nuc) (4)   
Protein domain (3)   
   Pfam (3)   
All databases (28)   

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