KEGG   Corvus cornix (hooded crow): 104697209
Entry
104697209         CDS       T03546                                 
Symbol
POLR2B
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2
  KO
K03010  DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6]
Organism
ccw  Corvus cornix (hooded crow)
Pathway
ccw03020  RNA polymerase
ccw03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:ccw00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    104697209 (POLR2B)
  09124 Replication and repair
   03420 Nucleotide excision repair
    104697209 (POLR2B)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ccw03021]
    104697209 (POLR2B)
   03400 DNA repair and recombination proteins [BR:ccw03400]
    104697209 (POLR2B)
Enzymes [BR:ccw01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     104697209 (POLR2B)
Transcription machinery [BR:ccw03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Core subunits
     104697209 (POLR2B)
DNA repair and recombination proteins [BR:ccw03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      104697209 (POLR2B)
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_1 RNA_pol_Rpb2_2 RNA_pol_Rpb2_7 RNA_pol_Rpb2_4 RNA_pol_Rpb2_3 RNA_pol_Rpb2_5
Other DBs
NCBI-GeneID: 104697209
NCBI-ProteinID: XP_039406589
Position
4:18483625..18502681
AA seq 1174 aa
MYDADEDMQYDEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVE
DAPPIDLQAEAQHASGEVEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTY
SAPLYVDITKTVIKEGEDQLQTQHQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLD
PGGYFIINGSEKVLIAQEKMATNTVYVFAKKDSKYAYTGECRSCLENSSRPTSTIWVSML
ARGGQGAKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEM
VKPSLDEAFVIQEQNVALNFIGSRGAKPGVTKEKRIKYAKEVLQKEMLPHVGVSDFCETK
KAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQ
KFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLS
HLRRLNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSP
ILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSE
VSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASG
VVEYIDTLEEETVMLAMTPDDLQEKGVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSP
RNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIV
AIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGYDQEEVFEKPTRETCQGM
RHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELESTNRRFTKRDCSTFLRTSE
TGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEG
ITPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAVNVQKISNLLSDYGY
HLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGRSR
DGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGC
RNKTQISLVRMPYACKLLFQELMSMSIAPRMMSV
NT seq 3525 nt   +upstreamnt  +downstreamnt
atgtacgacgcggacgaagatatgcaatatgatgaagacgatgatgaaattacccccgac
ctgtggcaagaagcctgctggattgttattagctcctattttgatgaaaagggtttagtc
aggcaacagctggattcctttgatgagtttattcagatgtctgtgcagagaattgttgaa
gatgctccaccaattgatttacaagctgaagcccagcatgcctcaggagaagtggaagag
ccaccccggtatctgttgaagtttgaacaaatctatctctccaaacctacacattgggaa
agagatggagcaccctcacctatgatgccaaatgaagccagactgagaaatcttacgtat
tctgcccccttgtatgtggatataactaaaacagttattaaagaaggagaggaccaattg
cagacccagcaccagaaaacctttataggaaaaatccctatcatgttgcgttccacgtac
tgtttgctgaacggcttaactgaccgtgatctttgtgagctgaacgagtgtccgcttgat
cctggtggctacttcatcattaacggatcagaaaaggttctgattgctcaggagaagatg
gctacaaacacagtgtatgtgtttgcaaagaaagattcaaaatatgcctacacaggagag
tgtagatcatgtctggaaaattcctctcgaccaacaagtactatatgggtcagcatgctg
gccagaggtggacagggtgcaaagaagagtgccattggtcagcgcattgtagcaactctg
ccgtatatcaaacaagaggtgcccatcatcattgtcttccgtgcactcggctttgtgtcc
gatagggacattctggagcacatcatatatgattttgaagacccagaaatgatggaaatg
gtcaaaccttctctggatgaagcatttgtcattcaggagcaaaatgttgccctaaacttc
attggctcaagaggtgccaagccaggtgtcaccaaagaaaagagaatcaagtacgccaaa
gaagtcttgcagaaagaaatgctcccacacgttggtgtcagtgacttctgtgaaaccaaa
aaggcctattttctagggtatatggttcatagattgttgctggcagcactgggaagaaga
gagctggatgacagagatcattatggcaacaagagactggatcttgctgggccactcttg
gctttcctgttcagaggaatgttcaagaatttgctgaaggaagtgagaatatatgcacag
aagttcattgacagagggaaagattttaacttggagttggcaattaaaacaagaattatt
tcagacggtttgaaatactcattggcaactggaaactggggtgaccagaagaaagctcat
caggccagagcaggagtatctcaggtgttgaaccgcctgacttttgcatccacactttcc
cacctgagacgcctgaattctccgattgggagagatggaaaactggccaagccccggcag
ctgcacaacaccctgtggggaatggtttgccctgctgagacccctgagggtcatgcagtc
ggacttgtgaagaacttagccttgatggcttacatttctgtggggtctcagccatccccg
attctggaattcttggaggagtggagtatggaaaacctagaagaaatctctccagcagca
atagctgatgctaccaagatctttgttaatggctgctgggtaggaatacacaaagatcca
gagcagctcatgaataccctaaggaagcttcgtcgtcagatggacatcattgtgtcagag
gtctcgatgattagagacattcgtgagcgagaaatccgcatctacaccgatgcaggcaga
atttgtcggccccttttaattgtggagaaacagaagttgctgctgaagaaaaggcacatt
gaccagctgaaggaacgagagtataacaactacagttggcaggatcttgtggccagtggt
gtagtagagtacattgacaccctggaagaagagactgtgatgctggcaatgactccagat
gacttgcaagagaaaggtgtggcgtattgttcaacatacacacactgtgagattcaccca
tccatgatcctgggagtgtgtgcatctattatccctttccctgatcacaaccagtctccc
aggaacacgtaccagtctgctatgggtaaacaggctatgggagtctacattaccaacttc
cacgtccgtatggacacgctggcacatgtgttgtattatccccagaagcccctggtaaca
acacgctccatggagtacttgaggttcagagagttaccagcaggtatcaactcgatcgta
gccattgcatcatacacaggctataaccaagaagactctgtcatcatgaaccgttctgct
gttgacagaggctttttcagatctgtgttctatcgctcatacaaagagcaggagtctaag
aaagggtatgaccaagaggaagtttttgaaaagcccacacgtgaaacttgccaaggtatg
agacacgcaatctatgacaaacttgatgatgatggtttgatagcccctggggtccgtgtg
tctggggatgatgtcatcattggcaaaacagtcacactgccagaaaatgaagatgagctg
gaaagcacgaacagacgcttcaccaagagagactgcagcaccttcctgcggaccagcgag
actgggattgtagatcaggtcatggtaaccctgaaccaggaagggtacaagttctgcaag
attagggtacgttctgtaagaattccgcaaattggagataaattcgctagcagacatggt
cagaaaggaacctgtggtatccagtacaggcaagaggatatgcccttcacatgtgaaggc
atcacacctgatatcattatcaacccccatgccatcccttcccgtatgaccattggtcac
ttgattgagtgtcttcagggcaaggtgtctgcgaacaagggagaaattggtgatgctaca
ccctttaatgatgctgtcaatgtgcaaaagatttctaatcttttatcagattatggctat
catctaagaggaaatgaggtcctctacaatggcttcactggtcgaaaaatcacatcccag
atcttcattggtcctacctattaccagcgtttgaagcacatggtggatgacaaaatccat
tctcgtgcaagagggccaatccagatccttaacagacagcccatggaaggcagatctcgt
gacggtggccttcgctttggagaaatggaacgagattgccagattgctcatggagcagcc
cagttcttgagagaaaggttgtttgaagcttcagacccataccaagtccatgtgtgtaac
ctctgtggaatcatggcgattgcaaacacgaggactcacacctacgaatgccgcggatgc
cgtaataaaactcagatatctttggttcgaatgccctatgcctgcaaactcctcttccaa
gaactgatgtctatgagtattgcacctcgtatgatgagtgtttag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (49)   
   KEGG ORTHOLOGY (1)   
   RefGene (45)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (7)   
   Pfam (7)   
All databases (66)   

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