KEGG   Corvus cornix (hooded crow): 104697880
Entry
104697880         CDS       T03546                                 
Symbol
TAF5
Name
(RefSeq) LOW QUALITY PROTEIN: transcription initiation factor TFIID subunit 5
  KO
K03130  transcription initiation factor TFIID subunit 5
Organism
ccw  Corvus cornix (hooded crow)
Pathway
ccw03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:ccw00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    104697880 (TAF5)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ccw03021]
    104697880 (TAF5)
   03036 Chromosome and associated proteins [BR:ccw03036]
    104697880 (TAF5)
Transcription machinery [BR:ccw03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     104697880 (TAF5)
   Coactivators
    SAGA/TFTC/STAGA complex
     104697880 (TAF5)
Chromosome and associated proteins [BR:ccw03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    PCAF complex
     104697880 (TAF5)
    STAGA complex
     104697880 (TAF5)
    TFTC complex
     104697880 (TAF5)
    SAGA complex
     104697880 (TAF5)
    SLIK complex
     104697880 (TAF5)
SSDB
Motif
Pfam: WD40 TFIID_NTD2 NBCH_WD40 ANAPC4_WD40 Nup160 CDK5RAP3 WD40_like RAB3GAP2_N eIF2A VID27
Other DBs
NCBI-GeneID: 104697880
NCBI-ProteinID: XP_039410100
Position
6:complement(12409505..12420120)
AA seq 788 aa
MAALHEEPAEVVAAQPDPEAGTPPPPPALPPATAAAAAASAAAPATAAEGEAAGAGGDAA
PPKPAAPGPSASPAALDRQTLVAVLQFLRRSNLRESEEILRREARLLGDDLGAAALSPAS
AGXPGGSGSDADSGEALLGRGTSAAAVAIGGSVATVATSSPGVAAVAAVPPGKVGGAVVV
EDQPDVSAVLSAYNQQGDPTLYEEYYSGLKHFIECSLDCHRAELSQLFYPLFVHMYLELV
YNQHESEAKSFFERFHGDQECYYQDDLRVLSSLTKKEHMKGNETMLDFRTSKFVLRISRD
SYQLLKRHLQEKQNNQIWNIVQEHLYIDIFDGMPRSKQQIDAMVGSLAGEAKREANKAKV
FFGLLKEPEFDVPLDDEDEEGENEEGKPKKKKPKKDNVGSKSKKQDPNAPPQNRIPLPEL
KDSDKLDKVMNMKEAARRVRLGPECLPSICFYTFLNAYQGLTAVDITDDSSMIVGGFADS
TVRVWSVTPKKLRSVKTAADLSLIDKESDDVLERIMDEKTASELKILYGHSGPVYGTSFS
PDRNYLLSCSEDGTVRLWSLQTFTCLVGYKGHNYPVWDTQFSPYGYYFVSGGHDRVARLW
ATDHYQPLRIFAGHLADVTCTRFHPNSNYIATGSADRTIRLWDVLNGNCVRIFTGHKGPI
HSLAFSPNGRFLATGATDGRVLLWDIGHGLMVGELKGHTDTIYALRFSRDGEILASGSMD
NTVRLWDAVKAFEDLETDDFTTATGHINLPENSQDLLLGTYMTKSTPVVHLHFTRRNLLL
AAGAYSSQ
NT seq 2367 nt   +upstreamnt  +downstreamnt
atggcggcgctgcatgaggagccggcagaggtggtggcggcgcagccggaccccgaggcg
gggacgccgccgccgccacccgcgctgcctcccgccaccgccgccgccgccgccgcttcc
gccgctgccccggccaccgccgcggagggagaggcggcgggagcaggtggggatgcagca
cccccgaaacccgcggcgccgggcccgtccgcctccccggcggcgctggaccggcagacg
cttgtggccgtactgcagttcctgcggcgcagcaacctccgggagtccgaggagatccta
cgccgcgaagcccgcctgctcggcgatgacctgggtgccgccgctctcagccctgccagc
gccgggnctcctgggggctccggcagcgacgcggactccggcgaggcactgctcggccgg
ggcactagcgctgccgccgtcgccataggaggcagcgtcgccactgtcgcgacttccagc
cccggggtggccgcggttgccgccgtgccgccggggaaagtcggaggcgccgtggttgtg
gaggatcagccggatgtgagcgcggtgttgtcggcctacaaccagcaaggggacccgacg
ctgtacgaggagtactacagtggattgaaacacttcatcgagtgttccctggactgtcat
cgggcggaattgtctcagctcttttatcctctctttgtgcacatgtacttggaattggtc
tacaatcaacatgagagtgaggcaaagtctttttttgaaagatttcatggggatcaggag
tgctattaccaggatgacctgcgtgtattgtcgagcttaaccaaaaaagaacatatgaaa
ggtaatgagaccatgctggatttccgaacaagcaagtttgtgctgcgcatttcccgtgac
tcttaccaactcttgaagaggcatcttcaggaaaagcagaacaatcagatctggaacatt
gttcaggagcatctttacattgatatctttgatggaatgcctcgcagtaaacaacagata
gatgctatggttggaagcttggctggggaggcaaaacgagaggctaataaagcaaaggtt
tttttcggcttacttaaagaaccagagtttgatgtgcctttggatgatgaagatgaagaa
ggagaaaatgaggaaggaaagccaaagaagaaaaaacctaaaaaagataacgtagggtca
aaaagtaaaaaacaggaccctaatgctcctccccaaaacagaattcctctgcctgaactg
aaagactctgacaagctggataaagtaatgaatatgaaggaagcagcaaggcgagtgcgt
cttggaccagagtgcttgccctccatctgtttctacacattccttaatgcttaccagggt
ctgactgcagtggatattacagatgactccagcatgattgtaggaggctttgctgactct
actgtcagagtgtggtctgtgactccaaaaaagctacgtagtgtaaaaacagcagcagac
ctcagtctcattgacaaagaatcagatgatgtcttggagaggatcatggatgaaaaaaca
gcaagtgagttgaagattttatatggtcacagtggacctgtctatggcaccagcttcagt
cctgataggaactatctgttgtcctgttctgaggatggcactgtgagattgtggagtctc
caaacattcacgtgtttggtgggatataaaggacataattatccagtttgggatacacag
ttctctccttatggttattactttgtgtcagggggacacgacagagtggctcgtctgtgg
gcaacagatcactaccagccattacggatctttgctggccatcttgcagatgtgacgtgt
acccgatttcatcccaactccaactatattgctacgggctcagcagacaggactatacgg
ctctgggatgttttgaatgggaattgtgtaagaatattcactggacataagggaccaatt
cattcattggcattttctcctaatgggcgattcctggctactggagcaacagatggaaga
gttctgctgtgggatattggacatggcttgatggttggcgaattgaaagggcacactgac
actatctatgcactcagattcagtagagatggagagattttagcatcaggttcaatggat
aacacagttcgtctgtgggatgctgtgaaggcatttgaagatttagaaactgatgacttt
actacagccactggacacataaacttgcctgagaactcacaggacttgctactgggcaca
tacatgaccaaatcaaccccggttgttcatctccatttcacacgcaggaacctgctgctg
gctgcgggagcctacagctcacagtag

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (14)   
   KEGG ORTHOLOGY (1)   
   RefGene (10)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (10)   
   Pfam (10)   
All databases (31)   

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