KEGG   Corallococcus coralloides: COCOR_06128
Entry
COCOR_06128       CDS       T01780                                 
Symbol
rho
Name
(GenBank) transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
ccx  Corallococcus coralloides
Pathway
ccx03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ccx00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    COCOR_06128 (rho)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ccx03021]
    COCOR_06128 (rho)
   03019 Messenger RNA biogenesis [BR:ccx03019]
    COCOR_06128 (rho)
Transcription machinery [BR:ccx03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     COCOR_06128 (rho)
Messenger RNA biogenesis [BR:ccx03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     COCOR_06128 (rho)
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N Spore_III_AA AAA_25 NACHT OB_RNB AAA_22 ATPase_2
Other DBs
NCBI-ProteinID: AFE10132
UniProt: H8MME5
Position
complement(7723722..7725335)
AA seq 537 aa
MAKARSPREKVVEPAFTEEKPRRKRAAAKEAEKPAPRSRRAPARREEAPAEEAEAPEVAA
EAPRPVLTPISRPVRDDELQELRGTEEETPAEEAAPAAPQESAEGPAITEVERDGTPMQV
IKLNDLKRMKIVDLAKMAHDTGIEGYQGLKKQDLIFALLGGIADKRFEVHAEGVLELLSD
GFGFLRSADSDYQPSPDDIYVSPSQVRRFNLRPGDTVTGPIRQPREGERFFALQKVDKVN
FADPMSDAARERILFDNLTPLYPTRKLKLEHESSEMTTRIIDMFCPIGLGQRCLIVAPPK
AGKTVLLQNIAHAISRNHPDVYLIVLLVDERPEEVTDMERSVRGEVVSSTFDEPATRHVQ
VAEMVIDKAKRLVEQKYDVCILLDSITRLARAYNTVVPASGKILSGGVDANALHKPKRFF
GAARNIEEGGSLTIIGTALIDTGSRMDEVIFEEFKGTGNSEIVLDRKLMEKRIFPTLDIN
KSGTRKEELLLSQADLVRITALRQVLHPFTPIDAMEFVLKHMRPTAANAEFLGSMNR
NT seq 1614 nt   +upstreamnt  +downstreamnt
atggccaaagcccgttccccccgagagaaggtagtcgagcccgcgttcaccgaggagaag
ccccggcgcaagcgcgctgcggcgaaggaggcggagaagcccgcgccccggtctcgccgt
gcgccggctcgccgtgaagaggctcccgccgaggaggccgaggcccccgaggtcgccgcg
gaagcgccccgtccggtgctcactcccatctcccgtcccgtgcgtgacgacgagctccag
gagctgcgcggcacggaggaggagacgcccgccgaggaggccgctcccgccgccccgcag
gagtccgcggaaggccccgccatcacggaggtcgagcgcgacggcaccccgatgcaggtc
atcaagctcaatgacctgaagcggatgaagatcgtcgacctggcgaagatggcccacgac
acgggcatcgagggctaccaggggctgaagaagcaggacctcatcttcgcgctgctgggc
ggcatcgccgacaagcgcttcgaggtccacgcggaaggcgtgctggagctgctcagcgac
ggcttcggtttcctgcgcagcgcggacagcgactaccagccgtccccggacgacatctac
gtgtcgccgtcgcaggtgcgccgcttcaacctgcggcccggcgacacggtgacgggcccc
atccgccagccccgcgagggcgagcgcttcttcgcgctgcagaaggtggacaaggtcaac
ttcgcggaccccatgtcggacgcggcgcgcgagcgcatcctgttcgacaacctcacgccg
ctctatccgacgcgcaagctcaagctggagcacgagtcgtcggagatgaccacgcgcatc
atcgacatgttctgccccatcggcctgggccagcgctgcctcatcgtggcgcctccgaag
gccggcaagacggtgctcttgcagaacatcgcgcacgccatcagccgcaaccacccggac
gtctacctcatcgtgctgctcgtggacgagcgcccggaggaagtgacggacatggagcgc
agcgtgcgcggcgaggtggtgtcctccaccttcgacgagcccgccacgcgccacgtgcag
gtggcggagatggtcatcgacaaggccaagcgcctggtcgagcagaagtacgacgtctgc
atcctgctggactccatcacccgtctggcgcgcgcctacaacacggtggtgcccgcgtcc
ggcaagatcctgtccggcggcgtggacgccaacgcgctccacaagcccaagcgcttcttc
ggcgcggcccgcaacatcgaggagggcggcagcctcaccatcatcggcacggcgctcatc
gacaccggcagccgcatggacgaggtgattttcgaggagttcaagggcacgggtaactcc
gaaatcgtcctggaccggaagttgatggagaagcgcatcttcccaacgctcgacatcaac
aaatccggcacccgcaaggaggagttgctcttgtctcaggcggacctggtgcgcattacg
gcgttgcgccaggtgctccacccgttcactcccatcgacgcgatggagttcgtgctcaag
cacatgcgtccgacggcggcgaacgcggagttcctgggctcgatgaaccggtag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (10)   
   KEGG ORTHOLOGY (1)   
   RefGene (7)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (9)   
   Pfam (9)   
All databases (25)   

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