KEGG   Campylobacter coli RM4661: YSS_02700
Entry
YSS_02700         CDS       T03166                                 
Name
(GenBank) FAD-dependent cmnm(5)s(2)U34 oxidoreductase
  KO
K15461  tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein [EC:2.1.1.61 1.5.-.-]
Organism
ccy  Campylobacter coli RM4661
Brite
KEGG Orthology (KO) [BR:ccy00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:ccy03016]
    YSS_02700
Enzymes [BR:ccy01000]
 2. Transferases
  2.1  Transferring one-carbon groups
   2.1.1  Methyltransferases
    2.1.1.61  tRNA 5-(aminomethyl)-2-thiouridylate-methyltransferase
     YSS_02700
Transfer RNA biogenesis [BR:ccy03016]
 Prokaryotic type
  tRNA modification factors
   Other tRNA modification factors
    YSS_02700
SSDB
Motif
Pfam: Methyltransf_30 DAO NAD_binding_8 Pyr_redox_2 Thi4 Pyr_redox_3 VDE HI0933_like FAD_binding_2 Pyr_redox 3HCDH_N
Other DBs
NCBI-ProteinID: AHK76474
Position
522958..524793
AA seq 611 aa
MKKANLIFKDNTPFSLDFDDFYFNSKDGLNESKFVYSEAFEFEENDTFIIAESGFGIGLN
FFLTLKRFLQAKKRPKKLFYTSIEGFYIEKDKLREIYQKLGFYEEFKEILEAFLKFYPKA
KKGYYRFYFEDCFLDLIFDDIAILRELDFNADVWFLDGFSPSKNSAMFDENFIAQVARLS
KTNTQICTFSASSALQKNLIKYGFEIQKTKGFRKREMIKAFLRKKNPILDKEAYFQRIPS
LYKNKKVAIIGSGICGATLAYELSLRDFEVSVFEKNDSLGCGASGNESGILSSLILKPDV
ALGEFSQLAFIEASRFYKQILDLNLKGVIEFAHTPLMQERFISQKDNILFKIDKNEAFLE
DGGHIKPKEILKSLFEKSQAKMYFNHEYDFFQYQDDKFILHFKNQKAMQDFDILIYAMGA
DTKDFLAYDGMLLSKVRGQVTHLKPFLDNAFALSSKAYICSSDGDLQVIGASYDRLNSNS
NPQKADDEENLQNIQEFLKGDEEIIIKGSRVGFRSYSSDRFAIVGAAYDEAFYKQEYKAL
LWTKNKAQVLPQNIPNLYLNLAHGSRAFSTSVLAARYLCALINEEPLGVFKNFIPCIHPA
RFLIRKLKKGI
NT seq 1836 nt   +upstreamnt  +downstreamnt
atgaaaaaagctaatttaatctttaaagacaataccccattttctttggattttgatgat
ttttattttaactcaaaagatggtttaaatgagagcaaatttgtttatagtgaggctttt
gaatttgaagaaaatgatacatttatcattgctgaaagtggctttggtatagggcttaat
ttctttttaacccttaaaagatttcttcaagcaaagaagcgtcctaaaaaattattttac
accagcattgagggtttttatatcgaaaaagacaagcttagagaaatttatcaaaagctt
ggattttatgaagaatttaaagaaattttagaagcttttttaaagttttatcctaaggct
aaaaaagggtattatcgtttttattttgaagattgttttttggatttaatctttgatgat
attgctattcttagagagcttgattttaatgctgatgtttggtttttagatggtttttct
ccgagtaaaaattcagccatgtttgatgaaaatttcatagctcaagttgctcgactttca
aagactaatacccaaatttgcaccttttctgcttcgagtgctttgcaaaaaaatcttata
aaatatggctttgaaatccaaaaaaccaaaggttttagaaagcgagagatgatcaaagct
tttttacgcaaaaaaaatccaattttagacaaagaagcttattttcaaagaattccaagt
ttgtataaaaataaaaaagtagccatcataggttcgggcatatgtggtgcaactttagct
tatgagctttctttgcgtgattttgaagtcagtgtttttgaaaaaaacgatagtttagga
tgtggcgcaagtggcaatgaaagtggaattttaagctctttgattttaaagcctgatgtt
gctttgggtgaattttctcaacttgcttttatcgaggcgagccgtttttataagcaaatt
ttagatttaaatctaaaaggagtgatagaatttgctcatactcctttgatgcaagagcgt
tttataagccaaaaagataatattttatttaagattgacaagaatgaagcttttttagaa
gatggcggacacattaagcctaaagaaattttaaaatctctttttgaaaaaagtcaagca
aaaatgtattttaatcacgaatatgatttttttcaataccaagatgacaaatttattttg
cattttaaaaaccaaaaagcaatgcaagattttgatattttaatctatgctatgggtgct
gatactaaggattttttagcttatgatggaatgcttttaagtaaggttagaggacaggtt
actcatctaaaaccttttttggataatgcatttgccctttcttcaaaagcttatatttgt
tctagtgatggggatttgcaagttattggcgcaagttatgatagactgaattcaaattca
aatccacaaaaagccgatgatgaagaaaatttgcaaaacatacaagaatttttaaaaggc
gatgaggaaatcatcatcaaaggctctagagtaggttttagatcttattctagcgatagg
tttgctattgtgggagcagcttatgatgaagctttttataagcaagaatataaagcttta
ttatggacaaaaaacaaggcgcaagttctgcctcaaaatatccctaatttatatcttaat
cttgctcatggctcaagagcttttagcacttctgttttggctgcaagatatctttgtgct
ttgattaacgaggagcctttgggggtgtttaaaaattttattccttgtatacatcctgca
agatttttgatccgcaagctaaagaaagggatataa

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Ontology (3)   
   KEGG BRITE (3)   
Chemical substance (9)   
   KEGG COMPOUND (9)   
Chemical reaction (3)   
   KEGG ENZYME (1)   
   KEGG REACTION (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (11)   
   Pfam (11)   
All databases (30)   

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