KEGG   Corynebacterium diphtheriae BH8: CDBH8_1055
Entry
CDBH8_1055        CDS       T01698                                 
Symbol
lig
Name
(GenBank) DNA ligase
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
cdb  Corynebacterium diphtheriae BH8
Pathway
cdb03030  DNA replication
cdb03410  Base excision repair
cdb03420  Nucleotide excision repair
cdb03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:cdb00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    CDBH8_1055 (lig)
   03410 Base excision repair
    CDBH8_1055 (lig)
   03420 Nucleotide excision repair
    CDBH8_1055 (lig)
   03430 Mismatch repair
    CDBH8_1055 (lig)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:cdb03032]
    CDBH8_1055 (lig)
   03400 DNA repair and recombination proteins [BR:cdb03400]
    CDBH8_1055 (lig)
Enzymes [BR:cdb01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     CDBH8_1055 (lig)
DNA replication proteins [BR:cdb03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     CDBH8_1055 (lig)
DNA repair and recombination proteins [BR:cdb03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     CDBH8_1055 (lig)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     CDBH8_1055 (lig)
   MMR (mismatch excision repair)
    DNA ligase
     CDBH8_1055 (lig)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      CDBH8_1055 (lig)
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT DNA_ligase_ZBD HHH_5 PTCB-BRCT BRCT_2 HHH
Other DBs
NCBI-ProteinID: AEX48578
Position
1060885..1062918
AA seq 677 aa
MTDNFADLRRQWDDLAEQVRHHRDAYYNHTPEISDAEFDQLFRQLQQLEQEHPELAVPES
PTLRVGAPVEQSSFDNVEHLERMLSLDNVFDAAELDDWLQRTPSATYLTELKIDGLSIDL
VYRSGRLERAATRGDGRVGEDVTANAKVIEDIPHRLQHSDAYPVPELVEIRGEVFIAVED
FALVNEQRQKEGGKPFANPRNAAAGSLRQKDTEAVRKRRLKMICHGIGASEGFEADSQFE
AYKALEAWGLPVSPYTKRVHSAQEVQERVTYWAQHRHDATHEMDGLVIKIDSFAEQRALG
STARAPRWAIAYKYPPEEVTTKLLDIQVGVGRTGRVTPFAVMDPVFVAGSTVEMATLHNQ
TEVKRKGVLIGDTVVIRKAGEVIPEVLGPVAEKRDGSEREFIFPTLCPVCGTRLAPQKED
DADWRCPNSQSCPAQLSSRLTYLAGRGAFDIEALGEKGAEDLIASGVLIDEAQLFNLTED
DLKRTKVYTTKAGALNATGEKLLANLESAKHTDLWRVLVALSIRHVGPTAARALAARYRS
LEALRAADVEDIANTEGVGAIIAQSFAQWFDVPWHRNIVEVWADAGVTMADSEADIPDQV
LEGLTIVVTGSLVDFSRDSAKEAIVSRGGKASGSVSKKTSYVVVGENAGSKETKARDLGL
RILNEDEFKQLLANGTV
NT seq 2034 nt   +upstreamnt  +downstreamnt
gtgactgataattttgctgatctacgccgccagtgggacgaccttgccgaacaagttcgt
caccatagagatgcctattacaaccacacccctgaaatctcagacgcggagtttgatcag
cttttccgccagctgcagcaattagaacaggaacatccagaattagccgtgccagagagc
cccactttgagagtcggcgctccagttgaacagagttctttcgacaatgttgagcacctt
gagcgcatgctcagtctggacaatgtttttgacgctgccgagcttgatgattggttgcag
cgaacccccagtgctacgtatcttactgagcttaaaatcgatggtctgtctatcgatttg
gtctatcgttctgggcgtcttgagcgggcggctactcgtggcgatggtcgggtaggagaa
gatgttactgctaacgccaaagttattgaggacatcccgcaccgtcttcagcattctgat
gcataccccgtgccagaacttgtcgaaattcgcggcgaggtattcattgccgtagaagat
ttcgctttagtcaatgaacaacgccaaaaagaaggcggaaagccgttcgcaaacccacgt
aatgctgctgctggctcgctgcgacaaaaagatactgaggctgttcgtaaacgccggttg
aagatgatttgtcatggaatcggtgcttcagaaggatttgaagcagatagtcagttcgag
gcatataaagccctagaagcatggggtctgccagtatcgccgtatacaaaacgtgtccac
tcggctcaagaagttcaggagcgcgtgacctactgggcacagcatcgccacgatgcgact
catgagatggacgggttagttatcaagatcgattcctttgcagaacagcgcgcgctagga
tccactgcccgcgcgcctcgctgggcaatcgcctacaaatatcctccagaagaagtgacc
accaagcttcttgatatccaggtcggcgttgggcgtaccggcagggtgacaccctttgcc
gttatggacccagtgttcgttgctggatccaccgtagagatggctacgttgcataaccag
accgaagtaaaacgaaaaggcgttcttatcggcgataccgtggttatccgcaaagccggc
gaagtgatcccagaggttctcggtcctgttgctgagaaacgtgacggtagcgaacgcgaa
tttatttttccgacactatgcccagtatgcggaacacgcctagcgccacaaaaagaagac
gacgccgactggcgatgcccgaactcccaatcatgcccagcgcagttgtcctcacgtctt
acttatctagctggacgaggcgcatttgatatcgaagccctcggagaaaaaggagctgag
gatcttattgcctccggcgtgcttatcgacgaagcccagctgtttaacctgacggaagac
gatcttaaacgcaccaaggtgtacaccaccaaagccggtgcgcttaacgcaactggtgaa
aagttgctggccaaccttgagtctgcaaagcatacggatctgtggcgtgttctcgttgca
ctgtcaatccgacacgttggaccaaccgcagccagagctcttgcggcacgttatcgaagc
ctcgaagcattacgggctgctgatgtggaggacattgctaatactgagggcgttggtgcg
attatcgcacagagcttcgcgcagtggtttgacgtgccatggcacagaaatatcgtagaa
gtatgggctgatgctggtgtcacaatggcggattcggaggcagatatccctgaccaagtt
ctagaaggattgaccattgtagtgaccggttctttggtcgatttttctagggattccgct
aaagaggcaattgtttctcgtggtggtaaagcaagcggctcggtttccaagaagaccagt
tacgtggtagtaggcgaaaacgcaggtagcaaggaaacgaaagcccgtgatctgggattg
cgcatcctcaacgaagacgagtttaaacagttgttagcaaacggcaccgtctag

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (9)   
   Pfam (9)   
All databases (28)   

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