KEGG T04861: ERS451417

Corynebacterium diphtheriae NCTC11397: ERS451417_00950

Entry

ERS451417_00950   CDS       T04861

Symbol

rho

Name

(GenBank) transcription termination factor Rho

K03628

transcription termination factor Rho

Organism

cdip Corynebacterium diphtheriae NCTC11397

Pathway

cdip03018

RNA degradation

Brite

KEGG Orthology (KO) [BR:cdip00001]
09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    ERS451417_00950 (rho)
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cdip03021]
    ERS451417_00950 (rho)
   03019 Messenger RNA biogenesis [BR:cdip03019]
    ERS451417_00950 (rho)
Transcription machinery [BR:cdip03021]
Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     ERS451417_00950 (rho)
Messenger RNA biogenesis [BR:cdip03019]
Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     ERS451417_00950 (rho)

SSDB

Motif

Pfam:

ATP-synt_ab Rho_RNA_bind Rho_N Spore_III_AA AAA_25 NACHT AAA_22

Other DBs

NCBI-ProteinID:

CKG85858

Position

1:946063..948126

AA seq 687 aa
MTNTDNSAQRNLAALRLPELRKIAAEMGLKGTSALRKGDLIAAINGTSAAHPTSVAPSEE
NKADAPKKERPARRRATKHVAQDAGSEPAPVVTEVAAPAEQNPAPKQEKEAPAGESERQP
RRRRAVKTSVKTTQEEPAEVRVAEATDKSSEEQSAEAGSEDKDNYHYESRSAARRARRNR
ARREQREYNRPGAKDESEASQPENENSRNDVAPESSEVADNSNEQARSDQADQSTKSDSH
DNGREDNRRGNRHERGERGDRNDRGDRNRRNRRNRRGRDRDDNRDNRENNNNEPREDEVL
QNVAGILDIVDNNVAFVRTSGYHAGAADVYVNNQMIRRLGLRSGDAIVGQVRMNGENNHG
GHNRGRNRQKYNPLVRVDSVNGMTVEEAKARPEFAKLTPLYPNQRLRLETESKVLTTRVI
DLIMPIGKGQRALIVSPPKAGKTTILQNIANAIATNNPECYLMVVLVDERPEEVTDMQRS
VKGEVIASTFDRPPSEHTAVAELAIERAKRLVEQGQDVVVLLDSITRLGRAYNNSSPASG
RILSGGVDSNALYPPKRFLGAARNIENGGSLTIIATAMVETGSAGDTVIFEEFKGTGNAE
LKLDRKISERRVFPAVDVNPSGTRKDELLLAPEEARIMHKLRRMLSALDNQQAIDLLIKQ
LKKTKSNGEFLMQVASSAPMAADAEED

NT seq 2064 nt +upstreamnt +downstreamnt
gtgactaatacagataacagcgcacagcgtaatctcgctgctctgcgtttgcccgaactg
cgcaaaattgccgcagaaatgggcctgaaaggtacgtccgccctgcgtaagggtgatcta
attgcggctattaacggtacctctgccgctcatccaacatctgtggccccctcggaagag
aacaaagcagatgcaccaaagaaggaacgtccagcacgtcgtcgtgcgactaagcacgtt
gcccaagatgccggttccgagccagcgccagtggtaacagaagttgctgcgcctgcagaa
cagaatcctgcgccaaaacaagaaaaagaagctccagctggtgagtccgagcgtcagcca
cgccgtcgtcgtgcagtaaagacgtctgtgaaaacaacgcaggaggaacccgctgaggtt
cgcgtagcagaagctactgacaaatcttctgaagagcagtctgctgaggcaggttctgag
gataaagataactaccactacgagtctcgttctgccgctcgacgtgcccgtcgtaaccgt
gctcgtcgtgagcagcgcgaatacaatcgccctggcgctaaagatgagagcgaagcatct
cagccagaaaatgagaattctcgcaacgacgtcgcaccagaatcctctgaggtagcagac
aacagcaacgagcaagctcgttctgatcaagctgatcaatccaccaagtcggactctcac
gacaatggtcgtgaggacaaccgccgtggcaatcgacacgagcgtggggagcgtggcgat
cgtaacgatcgtggggaccgcaaccgtcgtaatcgtcgtaaccgtcgtggccgtgaccgt
gatgataaccgtgataatcgcgaaaataacaacaacgaaccacgtgaagatgaagtcttg
caaaatgttgcaggcatcttggacatcgtggacaacaatgttgctttcgtgcgtacctcc
ggttaccacgccggtgccgctgacgtctatgtgaacaaccagatgattcgccgcttggga
ttgcgttctggcgacgcaattgtgggccaagttcgtatgaatggcgaaaacaaccacggc
ggacacaaccgtggccgtaaccgccagaagtacaacccattggtacgcgttgattcagtc
aacgggatgacggtggaagaagcaaaggcacgccctgagtttgctaagctcaccccgttg
taccccaaccagcgtctgcgcctcgaaaccgagtctaaggttttgactacccgtgtgatc
gatttgatcatgccgattggtaaaggtcagcgtgctttgatcgtgtctcctcctaaggct
ggtaagaccacgatcctgcaaaatatcgcaaacgctattgctaccaacaacccagagtgc
tacctcatggttgttttggtggatgagcgtccggaagaagttaccgatatgcagcgttct
gtgaagggcgaagttattgcatcgaccttcgaccgtccaccaagcgagcacaccgctgtt
gcagagctcgctattgagcgtgcgaagcgccttgtggagcagggacaggatgttgttgtc
ctcctagactccattacgcgtcttggccgtgcctacaacaacagctcacctgcatccggc
cgaattctctccggtggtgtggactccaacgcgttgtacccaccaaagcgtttccttggt
gcggctcgcaacatcgaaaatggtggatcgcttacgattatcgccacggccatggttgag
actggttctgccggcgacaccgtgatcttcgaggaattcaagggcaccggtaacgccgag
ctgaagctggatcgtaagatttctgagcgccgtgtattcccagctgtcgacgtcaaccca
tcgggtacccgtaaggatgagttgctgctggctccggaagaagctcgcattatgcacaaa
ctccgccgcatgctttctgctttggataatcagcaggctatcgatttgttgatcaagcag
ctcaagaagaccaagtccaatggtgaattcttgatgcaggtagcaagttctgcgccgatg
gctgcggatgctgaggaggactaa

All links

Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (7)   
   Pfam (7)   
All databases (15)   

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