KEGG T04061: AFK67

Cronobacter dublinensis: AFK67_03900

Entry

AFK67_03900       CDS       T04061

Name

(GenBank) 2'-5' RNA ligase

K01975

RNA 2',3'-cyclic 3'-phosphodiesterase [EC:3.1.4.58]

Organism

cdm Cronobacter dublinensis

Brite

KEGG Orthology (KO) [BR:cdm00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:cdm03016]
    AFK67_03900
Enzymes [BR:cdm01000]
3. Hydrolases
  3.1  Acting on ester bonds
   3.1.4  Phosphoric-diester hydrolases
    3.1.4.58  RNA 2',3'-cyclic 3'-phosphodiesterase
     AFK67_03900
Transfer RNA biogenesis [BR:cdm03016]
Prokaryotic type
  tRNA spricing factors
   Other tRNA splicing factors
    AFK67_03900

SSDB

Motif

Pfam:

LigT_PEase 2_5_RNA_ligase2

Other DBs

NCBI-ProteinID:

ALB65662

Position

complement(850459..850989)

AA seq 176 aa
MSDQKRLFFALPLPAELQQHIMEWRAETFAPDAGRPIAAANLHITLAFLGDVSAQKQRTL
SALAGRISQQAFTLHLDDAGHWPRSQVVWLGSRQPPRGLLQLANLLRAQAARSGCPQSAQ
PFHPHVTLLRNAQHPVRLPPPGFGWALAAREFVLYESRFEKGRTRYQPLERWSLNP

NT seq 531 nt +upstreamnt +downstreamnt
atgtcagaccagaaacggctgtttttcgcgctgcctctgcccgccgagcttcagcaacac
atcatggaatggcgcgccgagaccttcgcgcccgacgcgggcaggcccatcgccgccgct
aatctgcatattacgctcgcttttttaggcgacgtcagcgcgcagaagcaacgcacgctc
agcgcgctcgccgggcgtatcagccagcaggcatttacgctgcatcttgatgacgcgggc
cactggccccgctcgcaggtggtctggctgggctcgcgccagccgccgcgcggcctgttg
cagctcgcgaatcttctgcgcgcgcaggccgcgcgcagcggttgcccacaaagcgcgcag
ccctttcatccgcatgtcacattactgcgtaacgctcagcacccggtcaggctgccgccg
ccagggtttggctgggcgcttgccgcgcgggaatttgtgctgtatgagtcgcgttttgaa
aagggacgtacccgttaccagccgctggagcgctggtctcttaacccataa

All links

Ontology (3)   
   KEGG BRITE (3)   
Chemical substance (3)   
   KEGG COMPOUND (3)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (2)   
   Pfam (2)   
All databases (14)   

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