KEGG   Castellaniella defragrans: BN940_01741
Entry
BN940_01741       CDS       T03058                                 
Name
(GenBank) 2'-5' RNA ligase
  KO
K01975  RNA 2',3'-cyclic 3'-phosphodiesterase [EC:3.1.4.58]
Organism
cdn  Castellaniella defragrans
Brite
KEGG Orthology (KO) [BR:cdn00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:cdn03016]
    BN940_01741
Enzymes [BR:cdn01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.4  Phosphoric-diester hydrolases
    3.1.4.58  RNA 2',3'-cyclic 3'-phosphodiesterase
     BN940_01741
Transfer RNA biogenesis [BR:cdn03016]
 Prokaryotic type
  tRNA spricing factors
   Other tRNA splicing factors
    BN940_01741
SSDB
Motif
Pfam: LigT_PEase 2_5_RNA_ligase2
Other DBs
NCBI-ProteinID: CDM22825
UniProt: W8X8C3
Position
377027..377644
AA seq 205 aa
MTARPAGSPRPDAARAAGGEGAPGRRVFFALWPDAEAVEILSGWARQAHAAFGGRIMRPE
TLHLTLAFLGTVPLDRIADLTALLEEARPIGGTLRLDRYGRFHGPKIVWAGPSATPPWLD
ALHGWLWRALARRGFARPDEPFRPHVSLLRRAEPGELDTLPAPAPLDWTPRRCVLAASAP
SPAGSFYEILAERVLTRRNPHGSGG
NT seq 618 nt   +upstreamnt  +downstreamnt
atgacggcccgcccggccggatcgccgcgcccggacgcggcgcgcgcggcgggcggcgag
ggcgccccgggccgacgcgtgttcttcgccctgtggcccgacgccgaggccgtcgaaatc
ttgtcgggctgggcgcgccaggcccatgcggcgttcggcgggcgcatcatgcggcccgag
accctgcacctgaccctggccttcctgggcacggtgcccctcgaccggattgcggacctg
acggccctgctggaagaagcccgcccgatcggcggcacgctgcgcctggaccgctacggc
cgcttccacggcccgaagatcgtctgggccggcccgtcggcgacgccgccctggctggac
gcgctgcacggctggctgtggcgggcgctggcgcgccggggcttcgcgcggccggacgag
ccgttccgcccgcacgtgtcgctgctgcgccgcgcggagccgggcgagctggacacgctg
cccgcgcccgcgcccctggactggacgccgcgccgctgcgtgctggcggcctcggcgccg
agtccggcggggtccttctacgagatcctggccgaacgtgtattgacccggcggaacccg
cacggttcaggcggctaa

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Ontology (3)   
   KEGG BRITE (3)   
Chemical substance (3)   
   KEGG COMPOUND (3)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (13)   
   KEGG ORTHOLOGY (1)   
   RefGene (10)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (2)   
   Pfam (2)   
All databases (25)   

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