KEGG   Castellaniella defragrans: BN940_04371
Entry
BN940_04371       CDS       T03058                                 
Name
(GenBank) DNA polymerase III subunits gamma and tau
  KO
K02343  DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
Organism
cdn  Castellaniella defragrans
Pathway
cdn03030  DNA replication
cdn03430  Mismatch repair
cdn03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:cdn00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    BN940_04371
   03430 Mismatch repair
    BN940_04371
   03440 Homologous recombination
    BN940_04371
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:cdn03032]
    BN940_04371
   03400 DNA repair and recombination proteins [BR:cdn03400]
    BN940_04371
Enzymes [BR:cdn01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     BN940_04371
DNA replication proteins [BR:cdn03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     BN940_04371
DNA repair and recombination proteins [BR:cdn03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     BN940_04371
SSDB
Motif
Pfam: DNA_pol3_delta2 DNA_pol3_gamma3 AAA RuvB_N AAA_22 AAA_16 AAA_14 AAA_18 AAA_2 AAA_5 AAA_30 TsaE AAA_19 nSTAND3 Adeno_E1B_55K_N AAA_28 Mg_chelatase Herpes_Helicase PIF1 ABC_tran
Other DBs
NCBI-ProteinID: CDM23347
UniProt: W8X228
Position
945144..946721
AA seq 525 aa
MARKWRPRSFDTLIGQDHVVRALTHALSSGRLHHAWLFTGTRGVGKTTLSRILAKSLNCV
QGVTATPCGHCQACTEIDAGRYVDYIELDAASNRGVDEMTQLLEQAVYAPSSGRFKVYMI
DEVHMLTGHAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCLQFNLKQMTVPAIVD
HLQDILAQESVPADPQGLRLIAQAASGSMRDALSLTDQAISFSAGNLTAAAVGEMLGTLD
QRHLLDLLRALAAADAPGILAVADDLAARGLSFQAALGDLAVLLSRVAIAQRLGHAQADD
PLAEDVTALAGVLTPDDVQLFYAVAVHSRQELALAPDEQAGFIMACLRMLALLPEGRVPP
VVMSSPPTAGAEARPAAAPDAAAPVPVEAAVPAPAAPASAEAAVSVPAASAPAGTAAPRY
SPEPAPVAARAAHAAPAAAPSAWAPAPAPVPAAPVPPVPAQAASAAALAETPAWEAAPPG
SRSRRPIPIRRPTATRSRTPIRRRPRRRTRPHPPRTTGRTPSPTT
NT seq 1578 nt   +upstreamnt  +downstreamnt
ttggcgcgcaaatggcgcccccgttcattcgatacgctgatcggccaggatcacgtggtg
cgtgccctgacccatgcgctgtcgtccggccggctgcaccacgcctggctgttcaccggc
acgcgcggcgtgggcaagaccaccctgtcgcgcatcctcgccaaatccctgaactgcgtc
cagggcgtcaccgcgacgccctgcggccattgccaggcctgcacggagatcgacgcgggc
cgctacgtggactacatcgagctcgacgccgcctcgaaccggggcgtcgacgaaatgacc
cagctgctggaacaggcggtctacgcgccgtcgtccggccgcttcaaggtctacatgatc
gacgaagtccacatgctgaccgggcatgcgttcaacgccatgctcaagacgctcgaagag
ccgcccgagcatgtcaagttcatcctggcgaccaccgatccgcagaagatcccggtgacg
gtgctgtcgcgctgcctgcagttcaacctgaagcagatgacggtgcccgccatcgtcgac
cacctgcaggacatcctggcgcaggaatccgtgccggccgacccccaggggctgcgcctg
atcgcccaggcggcgtccggctcgatgcgcgacgccctgtcgctcacggaccaggccatc
tcgttctcggcgggcaacctcaccgccgccgccgtgggcgagatgctcggcaccctggac
cagcgccatctgctggacctgctgcgggcgctggccgcggccgacgcgcccggcatcctg
gccgtggccgacgacctggccgcgcgcggcctgtcgttccaggcggccctgggcgacctg
gccgtcctgctgtcgcgggtggccatcgcccagcgcctgggccatgcccaggccgacgat
cccctggccgaagacgtcaccgccctcgccggcgtcctgacgccggacgacgtgcaactg
ttctacgccgtggcggtgcacagccgccaggaactcgccctggcgcccgacgagcaggcg
ggcttcatcatggcctgcctgcgcatgctggccctgctgccggaaggccgcgtgccgccc
gtggtgatgagctcgccgccgacggccggcgcggaggcccgtccggccgccgcgcccgac
gcggcggcgcccgtccccgtcgaagccgccgtgcctgcgcctgcagcgcccgcgtccgct
gaagccgccgtgtccgtgcccgcagcgtccgcgcccgccggaaccgccgcgcccaggtat
tcgcccgagcccgcgccggtcgcagcccgggccgcccatgccgcccccgccgccgcgccg
tccgcgtgggcgcctgcaccggcccccgttcccgccgcacccgtgccgccggtcccggcc
caggccgcttccgccgccgcactcgccgagactcccgcctgggaggccgcgccccccggc
agccgatcccgtcgcccgatcccgatccggcgcccgaccgcgacccgatcccggaccccg
atccggcgccgcccgcgccgccggacgaggccgcatccgcctcggacgactggacggacg
ccgtccccgacgacctga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (65)   
   KEGG ORTHOLOGY (1)   
   RefGene (62)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (20)   
   Pfam (20)   
All databases (95)   

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