KEGG   Castellaniella defragrans: BN940_16336
Entry
BN940_16336       CDS       T03058                                 
Name
(GenBank) Formamidopyrimidine-DNA glycosylase
  KO
K10563  formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
Organism
cdn  Castellaniella defragrans
Pathway
cdn03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:cdn00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    BN940_16336
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:cdn03400]
    BN940_16336
Enzymes [BR:cdn01000]
 3. Hydrolases
  3.2  Glycosylases
   3.2.2  Hydrolysing N-glycosyl compounds
    3.2.2.23  DNA-formamidopyrimidine glycosylase
     BN940_16336
 4. Lyases
  4.2  Carbon-oxygen lyases
   4.2.99  Other carbon-oxygen lyases
    4.2.99.18  DNA-(apurinic or apyrimidinic site) lyase
     BN940_16336
DNA repair and recombination proteins [BR:cdn03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA glycosylases
     BN940_16336
SSDB
Motif
Pfam: H2TH Fapy_DNA_glyco zf-FPG_IleRS zinc-ribbons_6 Zn_ribbon_SprT Auto_anti-p27
Other DBs
NCBI-ProteinID: CDM25706
UniProt: W8X621
Position
3548704..3549480
AA seq 258 aa
MPGRVLRRLIVHESRLRWPVPADLPALVRDAEVLACERRGKYLLIRFPRGTQIVHLGMSG
SLRRVPMDEPPRKHDHVEWLFDEARFLLHDPRRFGAVLWHPAGAGPIEAHPLLAGLGIEP
FDPAFTPELLHAGLRGSRQTVKQLLLGGRIVVGVGNIYASESLFLAGIDPRLPGARLSRP
RSARLHAAILQTLGQALESGGSTLRDYVNAQGAPGAYFTLHAAVYEREGQPCPRCATPIR
RIVQGQRATYFCPGCQKR
NT seq 777 nt   +upstreamnt  +downstreamnt
atgcccgggcgcgtcctgcgccgcctgatcgtgcacgaatcccggctgcgctggccggtg
ccggccgacctgcccgccctggtgcgcgacgccgaggtgctggcctgcgagcggcggggc
aagtacctgctgatccgctttccgcggggcacgcagatcgtgcacctgggcatgtcgggc
tcgctgcggcgggtgccgatggacgagccgccgcgcaagcacgaccacgtggaatggctg
ttcgacgaggcgcgcttcctgctgcacgacccgcgccgcttcggcgccgtcctgtggcat
ccggccggcgccggcccgatcgaggcccatccgctgctcgccgggctgggcatcgagccc
ttcgacccggccttcacccccgagctcctgcacgcggggctgcggggcagccgccagacg
gtcaagcagctgctgctgggcgggcggatcgtcgtgggcgtgggcaacatctatgcgtcc
gaatcgctctttctggccggcatcgacccgcgcctgcccggcgcgcgcctgtcgcgcccg
cgcagcgcccggctgcacgcggcgatcctgcagaccctgggccaggcgctggaatcgggc
ggcagcacgctgcgcgactacgtcaacgcccagggcgccccgggcgcgtatttcacgctg
cacgcggccgtctacgaacgcgagggccagccctgcccgcgctgcgccacgccgatccgg
cgcatcgtccagggccagcgggcgacctatttctgcccgggatgccagaagcgctag

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (2)   
   KEGG ENZYME (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (7)   
   KEGG ORTHOLOGY (1)   
   RefGene (4)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (21)   

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