KEGG   Corynebacterium doosanense: CDOO_10435
Entry
CDOO_10435        CDS       T03413                                 
Name
(GenBank) ribonuclease E
  KO
K08300  ribonuclease E [EC:3.1.26.12]
Organism
cdo  Corynebacterium doosanense
Pathway
cdo03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:cdo00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    CDOO_10435
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cdo03019]
    CDOO_10435
   03009 Ribosome biogenesis [BR:cdo03009]
    CDOO_10435
Enzymes [BR:cdo01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.26  Endoribonucleases producing 5'-phosphomonoesters
    3.1.26.12  ribonuclease E
     CDOO_10435
Messenger RNA biogenesis [BR:cdo03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     CDOO_10435
Ribosome biogenesis [BR:cdo03009]
 Prokaryotic type
  rRNA processing factors
   CDOO_10435
SSDB
Motif
Pfam: RNase_E_G IF2_N S1 TcdA_TcdB DnaJ_CXXCXGXG
Other DBs
NCBI-ProteinID: AIT61638
UniProt: A0A097IHP0
Position
complement(2088950..2092093)
AA seq 1047 aa
MASTAEPKKPRRTTRKTSPASPITQAAADFDRSQLGESVRVYALAKQLGVSSKDLIAALA
DLGEKKVAQSSLTRADTEKLLDSLAPAAPPARKAAKKTTKKTTRKATKKATKKAVDNGTS
DENVDSPEPAPAASETPAPVEEDDKLRERVRKNVDNEIHQIEEKVKADLTEDLTAADVVA
EDVEPDETTALEVPEAPESRDADKAAFSPLFVAPGAKTEDAEETESPEETEPAEQGVDKR
GSRRTRHRVAQSRKKQSAPEPEPEPQPEPEAEETPQVDEPVAIKGSTRLEAQRRRRTEMR
ESGRTKKHIVSQAEFLARRESVERTMVVRERPRHDGGGTLTQVGVLEDDLLVEHFVTTES
QASMIGNIYLGRVQNVLPSMEAAFIDIGTGRNGVLYSSEVDWKTAGLGGRGRRIEQALRS
GDQILVQVSKDPLGHKGPRLTTQISLPGRFLVYVPGGRSAGISRKLPAPERKRLKDILGR
VIPGKGGAIIRTAAENVPEEAIAADVRRLHNLWEDVQERADKEKQSKGATPVTLYEEPDM
LVKVVRDLFNEDFASLVIDGKRSWSTVHSYVKSVAPDLADRLVKYDRRDHDGQDAFEHFR
VDEQIHKALGRKVWLPSGGYLIIDRTEAMIVIDVNTGKFTGAGGNLEETVTRNNLEAAEE
IVRQIRLRDLGGMIVVDFIDMVLPENQDLVLRRLKEALGRDHTRHQVSEVTSLGLVQMTR
KRIGTGLVETFTTECHHCEGTGLIFHEDPVDRDEHHAPAEHHAPAERPGRDNRQEKDGDS
EDVLERMADSVLKLGDPEETSDATEQDDRDDRDEESGEKRTSKRRGRRGGGRGRGSRDRD
TSSERQQQEQPQPQDAEPVSEWERIAAEAVETARELDPDEPSDADYVAETGEKSFAEALE
EFDSSPRRRRKTRGNSRSDRRPERGEADTDNRAEKSPRRRRATATTATTGTAEAPTESVQ
AEAQEQKRTEVSRKTPDAPARDEQPTRSSRGRRRAVRRRAAAGREDIRQEVKEPVHTDVE
KRPEPETGSSRGSRGRRRATRRSSSRR
NT seq 3144 nt   +upstreamnt  +downstreamnt
gtggcatcgaccgcagaaccgaaaaagccccgcagaaccacccggaagacgtcgccggcc
agccccatcacgcaggccgccgctgacttcgaccgctcccagctcggtgaatccgtgcgc
gtctacgcactggcgaaacagctcggcgtgtcctcgaaggacctcatcgccgccctggcc
gacctgggggagaagaaagtcgcgcagtcgtccctgacgcgcgcggacaccgagaagctg
ctcgactcgctcgcccccgccgccccgccggcgcggaaggcggccaagaagacgacgaag
aaaaccaccaggaaggccacgaagaaggccaccaagaaggcggtcgacaacgggacctcc
gacgagaacgtggattcccccgaacccgcccctgctgcgtcggagaccccggcaccggtg
gaggaggacgacaaactgcgcgagcgtgtgcgcaagaatgtcgacaacgagatccaccag
atcgaggagaaggtcaaggccgacctgaccgaggacctgactgcagcggatgtggttgcc
gaggatgtcgagccggacgagaccactgcactcgaagtgcccgaagctcccgaatccagg
gacgcggacaaggccgcgttctccccgctgtttgtcgcccctggtgcgaagacggaggat
gcagaggaaacggagagcccggaggaaacggagccggctgagcagggcgtcgataagcgg
ggttcccgtcggacccggcaccgcgtggcgcagagccggaagaagcagtccgcccccgag
cccgagccggagccgcagcctgagcccgaggcggaggagaccccccaggtcgacgaaccc
gtggccatcaagggatccacccggctcgaggcccagcgccggcgccgcaccgagatgcgc
gaatccgggcgcaccaaaaaacacatcgtctcgcaggcggagttcctcgcgcgccgggaa
tcggtcgagcgcaccatggtggtgcgggaacgaccgcgtcacgacggcggcggcaccctc
acccaggtgggcgtgctggaggacgacctgctggtcgagcacttcgtcaccaccgagtcg
caggcatcgatgatcggcaacatctacctcggacgggtgcagaacgtgctgccctcgatg
gaggcggcgttcatcgacatcggcaccgggcgtaacggcgtgctgtactcctcggaggtc
gactggaagaccgccggcctcggcggacgcggccgcagaatcgaacaggcgctgcggtcc
ggggaccagatcctggtccaggtgtccaaggatcccctcggccacaagggcccgcgcctg
accacccagatctccctccccgggcgtttcctcgtctacgtcccgggcgggcgcagcgcg
ggaatctcccgcaagctgcccgcgccggagcgcaagcggctgaaggacatcctcggtcgg
gtcatcccgggaaagggcggagccatcatccgcaccgccgcggagaacgtccccgaggaa
gccatcgccgccgacgtccggcgcctgcacaacctctgggaggacgtgcaggaacgtgca
gacaaggagaagcagtccaagggcgccaccccggtcacgctctacgaagagccggatatg
ctggtcaaggtcgttcgcgacctcttcaacgaggacttcgcctccctggtcatcgacggc
aagcgctcctggagcaccgtgcactcctacgtgaagtccgtggcgccggacctggcggat
cgcctggtcaagtacgaccgccgcgaccacgacggacaggacgccttcgagcacttccgt
gtcgacgagcagatccacaaggcgctggggcgcaaggtgtggctgccctccggcggctac
ctcatcattgaccggaccgaagcgatgatcgtcatcgacgtcaacaccggcaagttcacc
ggcgccggcggcaacctcgaggagaccgtcacccggaacaacctcgaggccgcggaagag
atcgtccgccagatccggctgcgtgacctcggtggaatgatcgtcgtcgacttcatcgac
atggtcctgcccgagaaccaggacctggtgctgcgccgactcaaggaggccctgggccgc
gaccacacccgccaccaggtctccgaggtcacctcgctcggcctggtgcagatgaccagg
aagcgcatcggcaccggactcgtggagaccttcaccacggagtgccaccactgcgagggc
acgggactgatcttccacgaggatcccgtcgaccgcgacgagcaccacgctcctgccgag
caccacgctcctgccgagcgacccggccgggacaaccgccaggagaaggacggcgactcc
gaggacgtgctcgagcggatggcggactcggtgctcaaactgggcgacccggaggagacc
tccgacgccacggagcaggacgaccgggacgaccgggacgaggagtccggagaaaagcgc
acgtccaagcgccgcggtcgccgcggtggcgggcgcggccggggaagccgggaccgggac
acctcctctgagaggcagcagcaggagcagccgcagccgcaggatgccgagccggtcagt
gagtgggagcgcatcgccgccgaagcggtggagacggcccgcgagcttgacccggacgag
ccctccgatgccgactacgtagccgagaccggggagaagtccttcgccgaggcacttgag
gagttcgactcctcgccccgccgacgccgcaagacccgtgggaactcccgctccgaccga
cgtccggagcgaggggaagcagataccgataaccgggcggagaagtcaccgcgccgacgc
cgcgccactgcaaccactgctactaccggcaccgccgaggctcccacggagtcggtgcag
gcggaggcgcaggaacagaagcgcaccgaggtctcccggaagacgccggatgccccggcc
agggacgagcagcccacgcgttcctcgcggggtcgtcgacgtgcggttcgccgccgcgcg
gcggccggccgggaagacattcgccaggaggtgaaggaaccggtgcacacggacgtcgag
aagcgtcccgagccggagactggttcctcccgcggttcgcgggggcgccgacgggcaacc
cgacggagctcgtcgcgccgttag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (16)   

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