KEGG   Corynebacterium diphtheriae 241: CD241_1714
Entry
CD241_1714        CDS       T01687                                 
Symbol
rne
Name
(GenBank) ribonuclease E
  KO
K08300  ribonuclease E [EC:3.1.26.12]
Organism
cdp  Corynebacterium diphtheriae 241
Pathway
cdp03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:cdp00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    CD241_1714 (rne)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cdp03019]
    CD241_1714 (rne)
   03009 Ribosome biogenesis [BR:cdp03009]
    CD241_1714 (rne)
Enzymes [BR:cdp01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.26  Endoribonucleases producing 5'-phosphomonoesters
    3.1.26.12  ribonuclease E
     CD241_1714 (rne)
Messenger RNA biogenesis [BR:cdp03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     CD241_1714 (rne)
Ribosome biogenesis [BR:cdp03009]
 Prokaryotic type
  rRNA processing factors
   CD241_1714 (rne)
SSDB
Motif
Pfam: RNase_E_G IF2_N DnaJ_CXXCXGXG DUF2362
Other DBs
NCBI-ProteinID: AEX44771
Position
complement(1805839..1808751)
AA seq 970 aa
MAEKSKKTTKNQAVSSPIGQAVAALDRSIIGEKIRVHILAKQLGVASKELIAQLATMGLK
KVAQSTLSNQEANQLLDSFVPAQPEVDEKLRHRVEKNVENEIAQIEAKVNRDLEEAAANG
HGVVDSEEEKLRYRVEKNVDNEVEQIKQQVERELSQRSAEVEDLHEVIELEKEAEPLEDV
EPESAPAPASVSYSVPLFIAPTVVDDELEEVEDDEDGEDDTDDDSTHAKRRRRGRRGAGR
GKGADDSAEIVEAEDVDEHESEEITEPVGIKGSTRLEAQRRRRAELREESKKKRHIVSEA
EFLARRESVTRTMVVRERDRVDHHGMVTQVGVLEDGMLVEHFVTSEAQASMIGNIYLGRV
QNVLPSMEAAFIDIGKGRNGVLYAGEVDWRAAGLGGRGRRIEQALKSGDQVLVQVAKDPI
GHKGARLTTQISFAGRYLVYVPGGRTAGISRKLPAPERKRLKEILKEVVPHDGGAIIRTA
AENVSAEAIGADVNRLHKLWDKIQQCTEEEKASKGAKPVTMYEEPNMLVKVVRDLFNEDF
TSLVIDGDRAWNTVHAYVQSVAPDLLGRLVRFDRSEHEGRDAFEVHRVNEQIKKALSRKV
WLPSGGTLVIDRTEAMTVIDVNTGKFTGAGGNLEETVTKNNLEAAEEIVRQMRLRDLGGM
IVVDFIDMVLPENQDLVLRRLTEALGRDRTRHQVSEVTSLGLVQMTRKRLGTGLLETFAT
ECPHCEGRGVIIHDDPVEQRDADVAMEKSHRARNERKKNKNHTPSEHPAAAAMHEEKKKV
SIEDLVAAVVIEDDPQPEPDVVPTPADDDVMDIVSAALDRAYEEDPDEPSGSDYLPLEEK
PQTYAEAVEEFERSPRRKRKTRGNSVSDVPPRKADFEKPEPQPEPEVVVEKVSSRGRRRA
VRRTVVEATPEVVAPTETVESSRGRRRAVRKKMAPQPVQTEAVVEDKHEVSAPSQGGRGR
RRASRRAPRR
NT seq 2913 nt   +upstreamnt  +downstreamnt
gtggctgaaaagtccaagaaaacaaccaaaaaccaagctgtatcttcgccgattggccaa
gcggtagctgcattggatcgctcgattatcggcgaaaaaatccgtgtgcatattctggcc
aagcaactaggtgttgcatctaaagagctcattgcgcagttggcaaccatgggactgaaa
aaagtagcgcagtcgacgttgagtaaccaagaggctaatcagctgctcgactcttttgtt
ccagcgcaaccggaagtagatgagaagttgcgccaccgcgtggaaaagaacgtggaaaat
gagattgcgcagatcgaagccaaggtcaaccgcgacctagaagaagcggcggcgaacggg
catggtgtagtggattctgaggaggagaagctgcgctaccgcgtggaaaagaacgtggat
aacgaggtcgagcagattaagcagcaggttgagcgcgagctaagtcagcgttcggcggag
gtagaggatctccacgaggttatcgagctcgaaaaagaagcggagccgctcgaggacgtt
gagccggaatctgcacctgcgccagcgagcgtgtcctatagtgttccgctgtttatcgcg
cccacggtcgttgatgatgagctcgaagaagtagaagacgacgaggatggggaagacgac
actgacgacgactccactcacgctaagcgtcgtcgtcgcggtcgtcgtggggctggtcgt
ggcaagggtgcagatgactcagctgagattgttgaagcagaagatgttgacgagcacgaa
tccgaagaaatcaccgagccagtaggtattaaaggctcaactcgtttggaagcacagcgg
cgtcgccgcgcggagctgcgtgaagagtcgaaaaagaagcgccacatcgtttctgaggcc
gagttcctagcgcgtcgcgaatctgttacgcgcacgatggtggtacgtgagcgcgatcgt
gtagaccaccatggcatggtgactcaggtgggcgtgctcgaagacggcatgcttgttgag
cactttgttaccagtgaggcccaagcctcgatgatcggcaacatctatcttggtcgcgtg
caaaacgtcctgcccagcatggaagctgccttcatcgacatcggaaagggccgcaacggt
gtgctttacgcgggcgaggtggactggcgtgccgcaggccttggtgggcgaggtcgtcgt
atcgagcaagccctgaaatccggtgaccaggtcctcgtccaggttgctaaagatcctatt
gggcacaagggtgctcgccttaccacccagatttctttcgcgggacgctacttggtgtac
gttcctggtggacgcactgcagggatttcccgcaagctcccagctcctgagcgtaagcgt
ttgaaggaaatcctcaaggaggtcgtgcctcacgacggcggtgccatcatccgaactgcc
gccgaaaacgtttctgcagaggcgatcggtgcagacgtcaaccgtttgcacaagctctgg
gataagatccagcagtgcaccgaggaagaaaaagcttccaagggtgccaagccggtgacc
atgtatgaagagcccaacatgctcgtcaaagtggtgcgtgatctcttcaatgaggatttc
acctccttggttatcgatggtgatcgtgcatggaacacggttcacgcgtatgtgcagtcg
gttgccccagacttgttgggccgcttggtgcgttttgatcgcagcgagcatgagggacgt
gacgccttcgaggtgcaccgcgtcaacgagcagattaaaaaggcactgtcacgaaaggtt
tggctgccatccggtggcaccttggtgatcgaccgcaccgaagccatgacggtgatcgac
gtgaacaccggcaagttcactggtgcaggtggaaaccttgaagaaactgtcaccaagaac
aaccttgaggctgcagaagagatcgttcgccagatgcgtctgcgcgacttgggtggcatg
atcgtcgtcgacttcatcgacatggtcttgcctgaaaaccaagacttggtcttgcggcgc
ctcaccgaagcgctaggacgcgaccggacgcgccaccaagtatccgaggtgacgtcgtta
ggcctcgtccagatgacccgcaaacgcttgggcactgggttgcttgaaacgtttgctacc
gaatgcccacactgtgaaggccgcggcgtgatcatccacgacgatcccgtcgagcagcga
gatgccgatgtggcaatggaaaagtctcatcgtgctcgcaatgagcgcaagaagaacaag
aaccacaccccatccgagcatccggctgcagctgctatgcatgaggaaaagaagaaggtc
agtatcgaagacctcgtcgccgcagtggttattgaggacgatccgcagccggaacctgac
gtagtgccaacacctgccgatgacgacgtgatggacatcgttagcgctgcgttggatcgt
gcttatgaggaagatcctgacgagccctccggatctgactatctgccgctagaagaaaag
ccgcagacctatgccgaggcagtggaagaatttgagcgttctccacgccgtaagcgtaag
acccgtggcaattccgtctccgatgtgccgccgcgcaaggcagattttgaaaagccagaa
ccgcaaccggaacctgaggttgtcgtggagaaagtaagctcacgtggtcgtcgtcgagct
gtgcgacgcacggtagtggaggctacccccgaggtggtagcgccaacggaaactgttgaa
tcctcccgcggtcgccgtcgcgctgttcgtaagaaaatggctcctcagccagtgcaaacg
gaggctgtagtggaagacaaacatgaggtttctgcaccatctcagggtggtcggggacgc
cgtcgtgcttcacgacgtgcaccgcgccgttaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (4)   
   Pfam (4)   
All databases (14)   

Download RDF
DBGET integrated database retrieval system