KEGG   Corynebacterium diphtheriae VA01: CDVA01_0889
Entry
CDVA01_0889       CDS       T01702                                 
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase
  KO
K05592  ATP-dependent RNA helicase DeaD [EC:3.6.4.13]
Organism
cdv  Corynebacterium diphtheriae VA01
Pathway
cdv03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:cdv00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    CDVA01_0889 (deaD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cdv03019]
    CDVA01_0889 (deaD)
   03009 Ribosome biogenesis [BR:cdv03009]
    CDVA01_0889 (deaD)
Messenger RNA biogenesis [BR:cdv03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     CDVA01_0889 (deaD)
Ribosome biogenesis [BR:cdv03009]
 Prokaryotic type
  rRNA helicases
   CDVA01_0889 (deaD)
SSDB
Motif
Pfam: DEAD Helicase_C DbpA ResIII UvrA_inter CMS1 adh_short Sp-DndD
Other DBs
NCBI-ProteinID: AEX83158
Position
933587..935635
AA seq 682 aa
MSITDNATSGENELDIKILSESQDNSQVDEGTTINNDVAADVDDSRVANTSEATDSAQQE
ADSAEKDGFEALGLPDAILKAVAKVGFETPSPIQAQTIPVLMQGHDVMGLAQTGTGKTAA
FALPILSRIDVKKRHPQALILAPTRELALQVADSFQSFADHLGDIHVLPIYGGQAYGIQL
SGLRRGAQIIVGTPGRVIDHLEKGSLDISNLRFLVLDEADEMLNMGFQEDVERILEDTPE
DKQVALFSATMPNGIRRLSRDYMKDPHEIQVKSQTRTNTNITQRYLNVAHRNKLDALTRI
LEVTEFEAMIMFVRTKHETEEVAEKLRARGFSAAAINGDIAQAQRERTVDQLKDGRLDIL
VATDVAARGLDVERITHVFNYDIPNDTESYVHRIGRTGRAGRSGEAILFVTPRERRMLRS
IERATNAKLIEMDLPTVDEVNESRKAKFADSITESLEDDQVAIFRSLIKSYAEEHDVPLE
DIAAALATQARAGSEFLMKEPPPEKRRERRDRDDRRGGRDRFDRDDRRGGRDRDRGSRFE
RNDDMQLYRLAVGKRQHVRPGAIVGALANEGGLSNKDFGRINIFVDHTLVELPKNMDPSV
IDRLSDTRISGQLIHIEKDNGRPPRRNDDGDRGGYRGGDRFDRDDRRGGRGGRDRGGYRG
GRDRNDRGDRGGYRGGRGGYRD
NT seq 2049 nt   +upstreamnt  +downstreamnt
atgagcattaccgataacgccaccagcggcgagaacgagctggacattaagattttgtcg
gaatctcaggataattcgcaggtagacgaaggcaccaccatcaataatgatgtcgctgcc
gatgtagacgactccagggttgcgaacacttctgaggccaccgactccgctcagcaagaa
gcggacagtgcagaaaaagatggattcgaggctctaggtctcccagacgcaatcctgaag
gcagtcgctaaggttggcttcgaaacgccatccccaattcaggcgcagaccattccggtg
ttgatgcaggggcatgacgttatgggcctcgcgcagacgggtacaggtaagacggcagca
ttcgcgttgccaatcttgtcgcgtatcgacgtcaagaagcgccacccacaggcgttgatc
ctcgccccaactcgcgaacttgctttgcaggttgcagactccttccagtccttcgcagat
catttgggtgacatccacgtgctgccaatctatggcggtcaggcttacggcattcagctg
tctggcctgcgccgtggcgcacagatcatcgtgggtactccaggtcgtgtgatcgaccac
ttggagaagggctccctcgacatttccaacctccgcttcctcgttctggacgaggcagac
gagatgctcaacatgggcttccaagaagacgttgagcgcattttggaggacaccccagag
gacaagcaggttgctttgttctctgccaccatgccaaatggtattcgtcgtttgtctcgc
gactacatgaaggatcctcacgagatccaagtgaagtcgcagacgcgcaccaacacgaac
atcactcagcgttacctcaacgttgcacaccgcaacaagctcgatgccttgacccgtatc
cttgaggtcaccgagttcgaagccatgatcatgttcgtgcgtaccaagcatgaaactgaa
gaagtcgctgaaaagcttcgcgcacgcggattctccgctgccgctatcaacggcgacatc
gctcaggctcagcgtgagcgcaccgtcgaccagctcaaggacggtcgcctcgacatcctc
gttgctaccgacgttgctgcccgtggcctcgacgttgaacgcatcactcacgtgttcaac
tacgacattccaaacgacacggaatcctacgtccaccgcattggtcgtaccggtcgtgca
ggtcgttctggtgaagcaatcttgtttgtcactccacgtgagcgtcgcatgttgcgttcc
atcgagcgtgccaccaacgcaaagctgatcgaaatggatctgccaaccgttgatgaggtc
aatgagtcccgtaaggcaaagtttgctgactccatcaccgagtctcttgaagacgatcag
gtagcaatcttccgtagcctgattaagtcctacgcggaagagcacgatgttccactagaa
gacatcgccgccgcattggctacccaagcacgcgctggttccgaattcttgatgaaggag
ccaccgccagagaagcgccgcgagcgtcgtgaccgcgacgatcgtcgtggcggacgcgac
cgcttcgaccgcgatgaccgccgtggcggccgtgaccgtgaccgtggctcccgcttcgag
cgtaacgacgacatgcagctttaccgcctagcagttggtaagcgccagcatgttcgacct
ggtgccatcgttggtgctctggcaaacgaaggtggcctgtccaacaaggacttcggtcgc
atcaacatcttcgttgatcacaccttggtcgagttaccaaagaacatggatccaagcgtg
atcgatcgcctcagcgatacccgtatctccggccaattgatccacatcgaaaaggacaat
ggccgaccaccacgtcgtaacgatgacggtgaccgcggcggataccgtggcggcgaccgc
ttcgaccgtgacgatcgtcgtggtggacgtggcggacgcgaccgcggcggataccgtggc
ggacgtgaccgcaacgaccgtggtgatcgcggcggctaccgtggtggccgcggcggatac
cgcgactaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (8)   
   Pfam (8)   
All databases (17)   

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