KEGG   Dickeya fangzhongdai ND14b: LH89_12745
Entry
LH89_12745        CDS       T03347                                 
Name
(GenBank) DNA polymerase I
  KO
K02335  DNA polymerase I [EC:2.7.7.7]
Organism
ced  Dickeya fangzhongdai ND14b
Pathway
ced03030  DNA replication
ced03410  Base excision repair
ced03420  Nucleotide excision repair
ced03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:ced00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    LH89_12745
   03410 Base excision repair
    LH89_12745
   03420 Nucleotide excision repair
    LH89_12745
   03440 Homologous recombination
    LH89_12745
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ced03032]
    LH89_12745
   03400 DNA repair and recombination proteins [BR:ced03400]
    LH89_12745
Enzymes [BR:ced01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     LH89_12745
DNA replication proteins [BR:ced03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     LH89_12745
DNA repair and recombination proteins [BR:ced03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA polymerase I
     LH89_12745
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     LH89_12745
SSDB
Motif
Pfam: DNA_pol_A 5_3_exonuc_N DNA_pol_A_exo1 5_3_exonuc HHH Prok-E2_E HHH_5
Other DBs
NCBI-ProteinID: AIR70030
Position
2887109..2890114
AA seq 1001 aa
MVQIADNPLILVDGSSYLYRAYHAFPPLTNGAGEPTGAMYGVLNMLRSLLQQYHPSHVAV
VFDAKGKTFRDDLFEHYKSHRPPMPDDLRAQIEPLHRMVKAMGLPLLSISGVEADDVIGT
LAQQAERAGKPVLISTGDKDMAQLVTPNITLINTMNNTILGPDEVCAKYGIPPSLIIDFL
ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAELDKIAGLTFRGAKTMAAKLEQNK
EVAYLSYQLATIKTDVELEQGCEQLTVNEPDVAELRELFTRYEFKRWLADVEAGQWLQGG
NKKSSPAMPFVKATVEDGPKEAASVLSQDGYVTILDEQTFQDWIARIKAAGLFSFDTETD
GLDTLTTNLVGISLAIKPGEAAYLPLGHDDLNGEYAREAPPSGIAQRIYSCNVYNSTVSP
AMSAPSTQTEEALPSGIVQRIYSCNVYNSTVSPAMSAPNTCAENAPVQLNLDWVLAQLKP
LLEDDSIRKIGQNLKFDKGVMARYGIDLRGIAFDTMLESYVIDSVAGRHDMDSLSERYLQ
HKTITFEEIAGKGKKQLTFNQIPLEQASVYAAEDADVTLRLHETLWAKLEPQQELRKVFQ
NIDMPLVPVLSRMERTGVLIDTTILAEHSRELTQRLAELEVQAHELAGEVFNLSSTKQLG
AILYEKQQLPVIKKTPKGAPSTNEEVLAELALNYPLPKLILEYRGLAKLKSTYTDKLPQM
INPLTKRVHTSYHQAVTATGRLSSSDPNLQNIPVRNEEGRRIRQAFIAQEGYCILAADYS
QIELRIMAHLSRDAGLLRAFSQGLDIHRATAAEVFGLPLDRVTTEQRRSAKAINFGLIYG
MSAFGLSRQLAIPRNEAQKYMNLYFERYPGVQEYMERTRQQAADQGYVSTLDGRRLYLPD
IHSRNANSRKAAERAAINAPMQGTAADIIKKAMIAIDAWLQQEKPLVTMLMQVHDELVFE
VHHSVLDEASAKIRSLMEGCMQLDVPLRVDIGTGSNWDQAH
NT seq 3006 nt   +upstreamnt  +downstreamnt
atggttcaaatagcagataatcccctcattctggttgacggttcatcgtacctttaccgc
gcctatcatgcctttcccccactgaccaacggtgccggcgaaccgaccggcgcgatgtat
ggcgtgctcaacatgttgcgcagtttgctgcagcaataccatcccagtcatgtcgcggtg
gtgtttgacgcgaagggtaagacgtttcgtgatgatttgtttgaacactacaaatctcac
cggccgccgatgccggatgatctgcgcgctcagattgaaccgttgcaccgcatggtaaaa
gcgatgggattgccgttgctctccatttccggcgtagaggcggatgatgtgattggaacg
ttggcgcagcaggcggaacgtgcgggtaaacctgttctgattagcaccggcgataaggat
atggcgcaactggtgacgccgaatatcacgctgatcaacaccatgaacaacaccattctg
gggccggatgaggtatgcgccaaatacggtattccgccgtcgctgatcattgattttctg
gctctgatgggggattcctccgacaacattcctggtgtgccgggcgtgggtgaaaaaacc
gcacaggcattactgcaggggctgggggggctggataccctgtatgccgagctggataaa
attgccggcctgaccttccggggcgccaaaaccatggcagccaagctggagcagaataaa
gaggtagcttacctttcctatcagctggctacgatcaagacggatgttgaactggagcag
gggtgtgaacaactgacggtgaatgagccggatgtggcggaactgcgcgaactgttcacc
cgttatgagttcaaacgctggctggcggatgtggaagccgggcagtggttgcaaggcggc
aacaaaaagagttcgccggccatgccattcgtcaaggcgacggtggaggacgggccgaaa
gaagcggccagcgtgctgtctcaggacggctatgtcaccattctggatgaacagacattt
caggactggattgcacgaattaaagctgctggtctgttctcgttcgacaccgaaaccgat
ggtcttgataccctcaccactaatctggttgggatttcactggcgatcaagccgggtgag
gcggcttacctgccattaggccatgatgatttgaatggtgagtacgcgagagaagccccc
ccgagcggaattgcacagcggatatactcctgcaacgtttataacagtactgtatcacct
gcgatgagcgcaccgagtacgcagacggaggaggctctcccaagcgggattgtacagcgg
atatactcctgcaacgtctataacagtactgtatcgcctgcgatgagcgcaccgaacaca
tgcgctgaaaatgcacctgtacaactgaatctcgattgggtgctggcgcaactgaaaccg
ctgctggaagatgacagcattcgcaagatcgggcaaaacctgaaatttgataaaggcgtg
atggcccgttacggcatcgatctgcgcggcattgccttcgataccatgctggaatcctat
gtgattgacagtgtggctggacgccatgacatggacagcctgtcagagcgctatttgcag
cataaaaccattacatttgaagagattgccggtaagggtaaaaaacagctgacgttcaat
cagattccactggagcaggcatctgtctacgcggctgaagatgccgatgtgacgctgcgt
ttgcatgagacgttatgggcgaaactggagccgcagcaggaactgcgcaaggtgttccag
aatatcgatatgccgttggtgccggtgttgtcgcgcatggagcgcaccggggtgctgatc
gataccactattctggcggagcattcgcgggagctgacgcaacgtctggcagagttggaa
gtgcaggcgcatgaactggcgggggaagtcttcaatttgtcttccaccaaacagttaggg
gccattctgtacgaaaaacagcagttgccggttatcaagaaaaccccgaagggcgcgcct
tccaccaatgaagaagtgctggccgaactggcgctgaattatccgctgccgaagttgatt
ctggagtatcgcggactggcgaaactgaaatccacttacacagacaaactgccgcagatg
atcaatccgctgaccaagcgggtgcacacctcttaccatcaggcggtaacggcaaccggg
cgcctttcctccagcgatcccaatctgcagaacattccggtacgtaatgaagaagggcgg
cgtatccgtcaggcgtttattgcgcaggaaggatactgcattctggcggcggactactcg
cagattgaattacgcatcatggcgcatctgtcacgggacgccggattgctgagggcgttt
tctcaaggtctggatattcaccgcgccacggccgccgaggtattcggtctgccgctcgac
agggtgaccaccgaacagcgccgtagcgccaaagccatcaactttggtttgatttatggc
atgagcgcatttggcttgtcccgtcagctggctattccgcgtaacgaagctcaaaaatat
atgaatctctattttgagcgttacccgggcgtgcaggagtatatggagcgcactcgccag
caggcggcggatcaaggatatgtatccacgctggatggccgtcgtctctatttgccggat
attcattcccgcaacgccaatagccgcaaggcggcggagcgggcggctattaacgcgccg
atgcaaggcaccgcggcggatatcatcaaaaaagcgatgatcgccattgatgcctggctg
caacaggaaaaaccgttggtgacgatgctgatgcaggtacacgatgaactggtgtttgaa
gtgcatcactccgtattggacgaagccagcgcgaaaatacgcagtctgatggaaggctgc
atgcagctggacgtgcccttacgggtggatatcggcaccggcagcaactgggatcaggcc
cattaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (7)   
   Pfam (7)   
All databases (20)   

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