KEGG   Dickeya fangzhongdai ND14b: LH89_13810
Entry
LH89_13810        CDS       T03347                                 
Symbol
putA
Name
(GenBank) transcriptional regulator
  KO
K13821  RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
Organism
ced  Dickeya fangzhongdai ND14b
Pathway
ced00250  Alanine, aspartate and glutamate metabolism
ced00330  Arginine and proline metabolism
ced01100  Metabolic pathways
ced01110  Biosynthesis of secondary metabolites
Module
ced_M00970  Proline degradation, proline => glutamate
Brite
KEGG Orthology (KO) [BR:ced00001]
 09100 Metabolism
  09105 Amino acid metabolism
   00250 Alanine, aspartate and glutamate metabolism
    LH89_13810 (putA)
   00330 Arginine and proline metabolism
    LH89_13810 (putA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:ced03000]
    LH89_13810 (putA)
Enzymes [BR:ced01000]
 1. Oxidoreductases
  1.2  Acting on the aldehyde or oxo group of donors
   1.2.1  With NAD+ or NADP+ as acceptor
    1.2.1.88  L-glutamate gamma-semialdehyde dehydrogenase
     LH89_13810 (putA)
  1.5  Acting on the CH-NH group of donors
   1.5.5  With a quinone or similar compound as acceptor
    1.5.5.2  proline dehydrogenase
     LH89_13810 (putA)
Transcription factors [BR:ced03000]
 Prokaryotic type
  Ribbon-helix-helix
   Other families
    LH89_13810 (putA)
SSDB
Motif
Pfam: Aldedh Pro_dh Pro_dh-DNA_bdg PutA_1st PRODH RHH_1
Other DBs
NCBI-ProteinID: AIR70223
Position
3124627..3128604
AA seq 1325 aa
MGTTTMGVKLDEATRERLKAAAQRIDRTPHWLIKQAIFSYLDRLESGADTPEIPSPIGLD
PIEAAEIMPQSPQEETHQPFLDFAEQVLPQSVLRSAITAAYRRPETEMVPMLLEQARMPE
AMSHAASTLAAGLAEKLRGQKNSGGRAGMVQSLLQEFSLSSQEGVALMCLAEALLRIPDK
PTRDALIRDKISNGNWQSHVGRSASLFVNAAAWGLLVTGKLVATHNESHLSGALNRIISK
SGEPLVRKGVDMAMRLMGEQFVTGETIAEALANARKQEERGFRYSYDMLGEAALTADDAE
AYLTSYQQAIHAIGKAASGRGIYEGPGISIKLSALHPRYSRAQYERVMDELYPRLLSLTL
LARQYDIGINIDAEEADRLELSLDLLERLCFEPRLVGWNGIGFVIQAYQKRCPFVIDALI
DLARRSQRRLMIRLVKGAYWDSEIKRAQMDGLEDYPVYTRKLYTDVSYLACARRLLAAPN
LIYPQFATHNAHTLSAIYHLAGNNYYPGQYEFQCLHGMGEPLYEQVVGKVSDGKLNRPCR
IYAPVGTHETLLAYLVRRLLENGANTSFVNRIADPSVALETLVADPVSETEALAAREERV
GQPHPRIPLPRALYGRGRRNASGLDLSSEHRLASLSSALLTSAARSWQAQPMLAVDDDAG
GDSRPVVNPAEPRDVVGHVREAQPQAIALALEQAVSVGDIWFATPAAERAAILSRAADLL
ESQQQHLLGLLVREAGKTLANAVAEVREAVDFLRYYAAQVSETFNNHDYRPLGPVACISP
WNFPLAIFTGQIAAALAAGNSVLAKPAEQTPLIAAQAVQILHDAGVPVGALQLLPGAGET
VGAALVGDERVRGVMFTGSTAVAAQLQRTLAGRLDPQGRTTPLIAETGGMNAMIVDSSAL
TEQVVTDVVTSAFDSAGQRCSALRLLCVQEEVAEKTLAMLRGAMAECRMGNPERLSTDIG
PLIDAEAKQRIERHIQTLRAKGRPVFQAAWPNSQDEQEWTRGHFIPPTLIELESVEELRQ
EVFGPVLHVVRYSRNQLDALIGQINAAGYGLTLGLHTRIDETINRVTGQAKVGNLYVNRN
MVGAVVGVQPFGGEGLSGTGPKAGGPLYLCRLLSHRPDDAVIRALARQDSERPADVAARQ
PLLKGLQTLEAWARQARRDGLVSCCQRYAELTQSGTVRVLPGPTGERDTYTLLPREQVLC
VADNDDDALVQLAAVLAAGSRALWIDSPERRSLHRQLPGEVQARVAFCRDGVTDDSRFDA
AIFHGDADQLRHLSEQLAQRDGAIVGIQGLARGETGITLERLLIERSLSINTAAAGGNAS
LMTIG
NT seq 3978 nt   +upstreamnt  +downstreamnt
atgggcaccaccaccatgggcgtcaagctcgatgaggccacgcgcgagcgtctcaaagcc
gcggcgcagcgtattgatcgcacgccgcactggctgattaaacaggccattttcagctat
ctcgaccgccttgaaagtggtgcggacacccctgaaattccttccccgatcgggctggac
ccgattgaggcggcagagattatgccgcaatcgccgcaagaagaaacccatcaaccgttt
ctggacttcgctgaacaggtgttgccgcagtcggtgctgcgctccgcgatcaccgccgcg
tatcgacggccggagacggaaatggtgccgatgctgctggaacaggcgcggatgccggaa
gccatgtcgcacgccgctagcacgctggcggccgggctggcagagaaactgcgcggacag
aaaaacagcggcgggcgcgccggcatggtgcaaagcctgctgcaggaattttcgctgtcg
tcgcaggaaggggtggcgttgatgtgtctggcggaagcgctgctgcgcatcccggacaaa
cccacgcgggatgcgttgatccgcgacaaaatcagtaacggcaactggcagtcgcacgtc
gggcgcagcgcctcgttgttcgtcaacgccgccgcctgggggttgctggtcaccggtaag
ctggttgccactcacaacgaatcccatctgtccggcgcgcttaaccgtatcatcagcaaa
agcggcgaaccgctggtgcgcaagggcgtggacatggcgatgcggctgatgggcgagcag
ttcgtgaccggggaaactatcgccgaggcgctggcgaatgcccgcaagcaggaagagcgc
ggtttccgttattcctacgatatgctgggcgaggcggcgctgaccgccgatgacgccgaa
gcgtatttaacgtcctaccagcaggcgattcacgccatcggcaaagccgccagcgggcgc
gggatttatgaagggccgggtatctccatcaaactgtcggcgctgcatccgcgttacagc
cgggcgcagtacgaacgggtgatggacgagctttatccgcgcctgctgtcgctgacgctg
ctggcgcggcaatacgatatcggcatcaacatcgatgccgaagaggccgaccggctggaa
ctgtccctcgatttactggaacgcctgtgtttcgaaccccggctagtgggatggaacggc
atcggctttgtgatacaggcttatcagaaacgctgcccgttcgtgattgacgcgctgatc
gatctggcgcgccgcagccagcgacggttgatgattcggctggttaaaggcgcttactgg
gacagcgaaatcaagcgcgcacagatggacgggctggaagactatccggtgtacacccgc
aagctgtacaccgatgtttcctatctggcctgcgcccgccgattgctggcggcgccgaac
ctgatctacccgcagttcgctacccacaacgcccatacgctcagcgctatctaccatctg
gcgggcaacaactactatccggggcagtatgaattccagtgcctgcacggcatgggcgaa
cctctgtatgagcaggtggtgggcaaggtgtcggacggcaaactgaaccgcccgtgccgg
atttacgcaccggtcggcacccatgaaacgctgctggcctatctggtgcgccgtttactg
gaaaacggcgccaatacctcgtttgttaatcggattgccgatccgtcggtggcgctggaa
acgctggtggccgacccggtaagcgagacggaagcgctggcggcgcgtgaagagcgggtc
ggacagccgcatccgcgcattccgttgccgcgcgcgttgtatggcagagggcggcgtaat
gccagtgggctggatttgtccagcgagcatcggctggcgtcgctgtccagcgcattactg
accagcgccgcccggtcgtggcaggcgcaaccgatgctggccgtagacgatgatgccggc
ggcgatagcagaccggtggtcaacccggcggaaccgcgcgacgtggtggggcatgtgcgc
gaggcgcaaccacaggcgattgcgctggcgctggagcaggcggtcagcgtcggcgatatc
tggttcgccacgccggctgccgagcgagcggcgattctgtcgcgcgccgccgatctgctg
gaaagccagcagcagcaccttttggggttgctggtgcgcgaagcgggcaagacgctggcg
aacgcggtggcggaggtgcgcgaagcggtggatttcctgcgttactacgcggctcaggtc
agcgagacgttcaacaatcatgactatcgtccgctgggcccggtggcgtgcatcagcccg
tggaacttcccactggcgatttttaccggtcagatagcggcggcgctggcggccggcaac
agcgtgctggccaaaccggcggagcaaaccccgttgattgccgcgcaggcggtgcagatt
ctgcacgatgccggggtgccggtcggcgcgctgcaattactgccgggcgccggcgaaacc
gtgggcgcggcgctggtcggcgacgaacgggtgcggggtgtgatgtttaccgggtctacc
gccgttgccgcgcagttgcagcgtacgctggccggtcggctcgacccgcaggggcgcacc
acgccgcttatcgccgaaaccggcggcatgaacgcgatgattgtcgattcttcagcgctc
accgagcaggtggtgacggatgtggtgacctcggcgttcgacagcgccggtcagcgctgc
tccgccctgcggctgctgtgcgtgcaggaagaggtggcggagaaaacgctggcgatgttg
cgcggtgcgatggcggagtgccgcatgggcaacccggagcgactttccaccgacatcggg
ccgctgattgacgccgaggcgaaacagcggattgagcgccacattcagaccctgcgagcg
aaggggcggccggtgtttcaggcggcgtggccgaacagccaggacgagcaggagtggacg
cgtgggcatttcatcccgccgacattgatagagctggagagcgtggaagagctgcggcag
gaagtgttcggcccggtactgcacgtggtgcgttactcccgtaatcagctggatgcgctt
attgggcaaatcaacgccgccggttatgggctcacgctcggcctgcacacccgtattgac
gagacgattaaccgggtaaccggccaggcgaaggtcggcaatctgtacgtgaaccgtaac
atggtcggggcggtggtcggcgtgcagccgttcggcggcgaagggctgtccggcaccggg
ccgaaagcgggcgggccgctctatctctgtcggctgctgtcgcaccgtccggatgacgcg
gtgatacgggcgctggctcgtcaggatagcgagcgcccggctgatgtcgccgcgcgtcag
ccgctgctgaagggattgcagacgctggaagcctgggcgcggcaggctcggcgtgacggg
ctggtttcatgctgccagcgttatgccgagctgacgcagagcggtaccgttcgggtgttg
cccggccctaccggcgaacgtgatacctatacgctgctgccgcgcgagcaggtgctatgc
gtggcggataacgacgatgatgcgctggtgcaactggcggcggtgctggcggctggtagc
cgggcgctgtggatcgattcgcccgaacggcggtcgctgcatcgtcaattacctggcgag
gttcaggcgcgagtagcgttctgtcgtgatggggtgacggacgacagccggtttgacgcc
gcgattttccacggcgacgccgatcagttgcgtcatttgagcgaacaactggcgcagcgc
gacggtgcgattgtcggtattcagggactggcgcgaggggaaaccggtattacgctggaa
cggctgctgatcgagcggtcgctgagcatcaacaccgcagcggccggcggcaacgccagc
ctgatgactattggataa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (5)   
   KEGG PATHWAY (4)   
   KEGG MODULE (1)   
Chemical substance (15)   
   KEGG COMPOUND (15)   
Chemical reaction (10)   
   KEGG ENZYME (2)   
   KEGG REACTION (8)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (6)   
   Pfam (6)   
All databases (43)   

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