KEGG   Cellvibrio sp. KY-GH-1: D0C16_02935
Entry
D0C16_02935       CDS       T06422                                 
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
ceg  Cellvibrio sp. KY-GH-1
Pathway
ceg03030  DNA replication
ceg03410  Base excision repair
ceg03420  Nucleotide excision repair
ceg03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:ceg00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    D0C16_02935 (ligA)
   03410 Base excision repair
    D0C16_02935 (ligA)
   03420 Nucleotide excision repair
    D0C16_02935 (ligA)
   03430 Mismatch repair
    D0C16_02935 (ligA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ceg03032]
    D0C16_02935 (ligA)
   03400 DNA repair and recombination proteins [BR:ceg03400]
    D0C16_02935 (ligA)
Enzymes [BR:ceg01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     D0C16_02935 (ligA)
DNA replication proteins [BR:ceg03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     D0C16_02935 (ligA)
DNA repair and recombination proteins [BR:ceg03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     D0C16_02935 (ligA)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     D0C16_02935 (ligA)
   MMR (mismatch excision repair)
    DNA ligase
     D0C16_02935 (ligA)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      D0C16_02935 (ligA)
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 HHH_5 BRCT HHH DNA_ligase_ZBD PTCB-BRCT RNA_pol_A_CTD
Other DBs
NCBI-ProteinID: QEY15012
UniProt: A0A5J6P7Z5
Position
709074..711116
AA seq 680 aa
MSTLSLFDNLPPEIDELRKQIGYHSYRYYALDNPEITDAEYDRLMRRLQELEAQYPESIT
PDSPTQRVGSAPLTAFQTVVHEMPMLSLDNAFSDEELLAFNQRILDRLKISGDIEYACEL
KLDGIAVSLLYRDGVLVRGATRGDGTNGEDITQNVRTINSIPLRLQGEGYPTLLEVRGEI
YMPKAGFNALNDKARAAGEKLFVNPRNAAAGALRQLDSKVTASRPLEMCAYSVGWVDGGS
LPDTHAGILSALKTWGFLTNRETAVAASIQQAMEYYRRIGEKRDSLAYDIDGIVFKVNSR
SLQDQLGFISRAPRWAIAYKFPAQEESTTLLEVEFQVGRTGAVTPVARLQPVFVGGVTVS
NATLHNRDEIQRLGLKVGDTVIVRRAGDVIPQIVQVIEAKRPVDAREIVFPEFCPVCNSP
VETVADEAVARCSGGLVCAAQRKEAIKHFAARKAMNVEGLGDKLVEQLVDLGLVNTLADI
YSLSREQLAGLDRMGEKSADNILLALENTKKTTLAKFIFALGIREVGEATARNFANYFGS
FEALAAADEESLQKVPDVGPVVAHFVAEFFSQESNREAVDKLRAAGIYWDNIEVASPEAL
PLNGLTYVLTGTLEALSRDDAKAHLLALGAKVAGSVSAKTDYVVAGPGAGSKLAKAEELG
LKVMDEAALLELLREHGRAV
NT seq 2043 nt   +upstreamnt  +downstreamnt
atgtctaccctttcgttattcgataatcttcctcctgaaatcgatgagctgcgcaagcag
attggttatcacagctatcgttactacgcgctcgataatcctgaaattacggatgcggaa
tatgaccgcttgatgcgtcgcttgcaggaactggaagcgcaataccctgaatcaattaca
cctgattccccaacccaacgcgtgggctctgctcctctaactgcgtttcaaaccgttgtg
catgaaatgccgatgttatctctggataacgcctttagtgatgaagagttactggcattt
aaccaaaggattctggatcgtttaaaaatctccggtgatatcgaatatgcctgtgaattg
aagctggatggtattgcagtgagcctgttgtatcgcgatggagttctggtgcgtggagct
acgcgtggtgatggaactaatggtgaagatattacgcaaaatgtgcgcaccattaattcc
attcctcttcgcttgcagggagaaggttatcccactctgttggaagtgcgcggcgaaatt
tatatgcccaaggcaggtttcaatgcgcttaatgataaagcacgtgccgccggtgaaaag
ctattcgtaaacccgcgtaatgcggccgcgggtgccttgcgccagctggattcaaaagtt
accgcgagccgtcctctggaaatgtgtgcctactctgtgggttgggtggatggcggcagt
ttgccggatacgcatgctgggatactttccgcactaaaaacctgggggtttttaaccaat
cgtgaaacagctgtggcggccagtattcagcaggcaatggaatattatcgtcgtatcggt
gaaaagcgcgattcgctagcctatgacattgatggaattgtttttaaagtaaattcgcgc
agtcttcaggatcagcttggatttatttcgcgcgcgccgcgctgggccattgcctataaa
tttccagcacaagaagaatccaccactttattagaagtcgaatttcaagtggggagaacc
ggtgcagtcaccccggtagcgcgtttgcaacccgtatttgttggtggtgttaccgtttct
aacgcgaccttgcacaatcgcgacgagattcaacgtcttggtttaaaagttggcgatacc
gttattgttcgccgcgccggggatgttattccacagatagtgcaagtgattgaagccaag
cgcccggtagatgcacgtgaaattgttttccccgagttttgtccggtttgtaattctcct
gttgaaactgttgcagacgaagctgtggcgcgttgttcgggcggtttggtttgtgccgct
cagcgcaaagaagccattaagcattttgctgcacgtaaagccatgaatgtggagggcttg
ggcgataagcttgttgagcagttagtggatttggggctggtaaatactcttgctgatatt
tacagcctatcacgcgaacagctggcagggcttgatcgcatgggtgaaaagtcggccgat
aatattttgctcgcgttggaaaacaccaaaaaaaccaccttagcaaaatttatctttgcc
ctgggtattcgtgaggttggcgaagcgactgcgcgcaattttgccaattattttggcagc
tttgaggcgctggctgctgccgatgaagaaagcctgcaaaaggtacccgatgtcgggccg
gtggtcgcgcattttgttgctgaatttttttcacaagaatccaatcgcgaggcggtggac
aaattacgcgcagcgggaatttattgggacaatattgaagtagcaagcccggaagcgctt
ccgctaaatggtttgacctatgtactaaccggaacgctcgaggctttatcgcgcgatgac
gcaaaagctcatctactcgcgttgggcgcaaaagttgctggcagcgtttcagcaaaaacg
gattacgtcgtcgctggacccggtgcaggctccaagctggcaaaagcggaagagctgggt
ctgaaagttatggatgaagcggcgctgcttgaactcttgcgtgaacatggaagggcagtg
taa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (9)   
   Pfam (9)   
All databases (28)   

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