KEGG T06422: D0C16

Cellvibrio sp. KY-GH-1: D0C16_03365

Entry

D0C16_03365       CDS       T06422

Symbol

topA

Name

(GenBank) type I DNA topoisomerase

K03168

DNA topoisomerase I [EC:5.6.2.1]

Organism

ceg Cellvibrio sp. KY-GH-1

Brite

KEGG Orthology (KO) [BR:ceg00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ceg03032]
    D0C16_03365 (topA)
   03400 DNA repair and recombination proteins [BR:ceg03400]
    D0C16_03365 (topA)
Enzymes [BR:ceg01000]
5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.1  DNA topoisomerase
     D0C16_03365 (topA)
DNA replication proteins [BR:ceg03032]
Prokaryotic type
  DNA Topoisomerases
   D0C16_03365 (topA)
DNA repair and recombination proteins [BR:ceg03400]
Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Facilitator
      D0C16_03365 (topA)

SSDB

Motif

Pfam:

Topoisom_bac Topo_Zn_Ribbon TOP1_ZnF Toprim zf-C4_Topoisom Zn_ribbon_recom Toprim_4

Other DBs

NCBI-ProteinID:

QEY15090

UniProt:

A0A5J6P3J0

Position

808407..811025

AA seq 872 aa
MGKSLVIVESPAKAKTINKYLGNDFVVKSSIGHIRDLPTSGGAKPVDAKERAKQAAATRK
MSAEDKALYQAQKSKSQLINRMGIDPENNWEAQYEILPGKEKVVEELRKLAEKADTVYLA
TDLDREGEAIAWHLREAIGGDESRYRRVVFNEITKSAIQNAFKTPGPIDQNRVDAQQARR
FLDRVVGYMVSPLLWEKVARGLSAGRVQSVAVRLVVEREREIRAFIPEEYWTLFADLKAD
KDPVAFEVKKKGDEAFKPINEAQTMTAVAALKGASYKVASREDKPTQSKPSAPFITSTLQ
QAASTRLGFGVKKTMMMAQRLYEAGYITYMRTDSTNLSKEAVESCREYILTHYGKSYLPE
SPVAYSSKEGAQEAHEAIRPSNVDVLPNQLSGMERDAERLYGLIWQQFVACQMTPAEYTS
TSVVVHAGEYELRTRGRVIRFDGFTKVLPQVAKKDEDVVLPEMKVGQVLPLIKLNPQQHF
TKPAARYTEASLVKELEKRAIGRPSTYAAIISTIQERGYVRQDNRRFYAEKMGDIVTERL
VESFDDLMDYSFTATMEEALDTVAQGGKNWRDLLDEFYAGFSKKLESASSASKGMRANDP
TDTDISCNLCGRHMQIRTGSTGVFLGCSGYALPPKERCKNTMNLVSGDEVIDAEADEEAE
SRQLRSKHRCKLCNSAMDSYLLDESRKLHICGNNPDCSGYEVEQGSYRLKGYEGPTIECD
KCNSEMQLKTGRFGKYFGCTNSECKNTRKLLKSGEAAPPKVEPIAMPELRCEKVDDHYVL
RDGAAGLFLAASQFPKNRETRAPLVEELLPYKDRIDPKYHFLLSAPAKDPEGNKAIIRFS
RKTKEQYVQTEVNGKATGWKAFYNSGKWLVQK

NT seq 2619 nt +upstreamnt +downstreamnt
atgggtaaatccttagttatcgttgagtcgcctgccaaggcaaaaaccattaacaaatac
ctgggtaacgactttgtcgttaagtccagtattggtcatatccgcgatctacccaccagt
ggcggagcaaaacctgttgatgcaaaagagcgcgctaaacaagcggcggcaaccaggaag
atgtcagctgaagataaagcgctttatcaagcgcaaaaaagcaaaagccagcttattaat
cgtatggggattgatccggaaaataattgggaagcccagtatgagattttgcccggcaag
gaaaaagtagtagaagagttgcgcaagctcgcagaaaaggctgacacagtctatctcgca
accgacttggacagagaaggggaggctatcgcttggcacttacgcgaggccattggtggg
gatgagtcccgctatcgtcgtgtggtatttaatgaaattactaaatcggccattcaaaat
gcgttcaaaacgcctggcccgattgaccaaaatcgcgtagatgcgcaacaagcccgccgg
tttttggatcgcgtcgtaggctatatggtttcgcctttgctttgggagaaagtcgctcgc
ggattatctgccgggcgcgtgcagtcagttgccgtgcgcttggtggtggaacgggagcga
gaaatccgtgcttttatacctgaagagtactggacattgtttgcggatttaaaagcggat
aaggatccggttgcatttgaggttaaaaagaagggtgacgaagcctttaaacccatcaat
gaagcacaaaccatgactgctgtcgctgcactgaagggcgctagttacaaggttgccagt
cgggaagataagccgacccaatcgaaaccttccgcaccgtttataacctcgacccttcag
caagctgcgagtacgcgacttggttttggcgtcaaaaaaaccatgatgatggctcagcgt
ctgtatgaagctggctacatcacctatatgcgtactgactccacgaacctcagtaaagag
gcggtcgagagctgtcgtgaatatattcttactcattacggcaaatcttacctgccagag
tcaccggttgcctattccagtaaggagggggcgcaagaggctcacgaagcgattcgacca
tctaatgttgatgtattacctaatcaactaagtggtatggagcgtgatgcggagcgtctt
tacggtctcatctggcaacaatttgtcgcttgtcaaatgacgccagcggagtacacgagc
acgagcgttgtagtgcatgcaggtgaatatgagttgcgcactcgcggtcgagtaattcgc
tttgatggtttcaccaaggtgttaccgcaggtcgcaaaaaaagatgaagatgttgttttg
cctgagatgaaagtggggcaagtattacccttgattaaattgaatccgcagcagcatttt
accaagcctgctgcgcgctacactgaggccagcttggtaaaagagctggagaaacgtgca
ataggtcgtccgtctacatatgcagcgattatttctacaattcaggagcgcggatatgtc
cgccaagataatcgtcgcttctatgccgaaaagatgggcgatattgttaccgagcgtttg
gtcgaaagttttgatgatttaatggattacagtttcaccgcaactatggaagaggcgttg
gacacggttgcgcaaggcggaaaaaactggcgcgatctgctcgacgaattttacgctgga
tttagtaaaaagttggagtccgcttctagtgcatccaaggggatgcgcgcgaacgatcca
actgatacagacatctcctgcaatctgtgtggtcgccatatgcagattagaaccggtagc
acgggtgtgtttttgggttgctccggttatgcgctgccgcccaaagaacgctgcaaaaat
acaatgaatcttgtttctggtgatgaggtcattgacgctgaagcggacgaagaagctgaa
tctcgccaactgagatccaagcatcgttgcaagctctgtaattctgcgatggattcatat
ttgctagatgagagccgtaaattacatatatgtggtaacaatccagattgttctggttac
gaagtggagcagggaagttacaggctgaaggggtatgaaggcccaactattgagtgcgac
aagtgtaacagcgaaatgcagcttaaaacggggcgtttcggtaagtactttggctgcacc
aatagtgagtgtaaaaacactcgcaagctacttaagagtggagaggctgcgccgccaaag
gtggagccgattgcgatgccggagttgcgctgcgaaaaagttgatgatcactacgttttg
cgcgatggagcggccggtctatttctggctgccagtcaattccctaaaaatagggagacg
cgtgcgccgctcgtggaggagctgttgccttacaaagatcggatcgatccaaaatatcac
tttttattatccgcaccagctaaagatccagagggcaacaaggccattattcgttttagt
cgcaagactaaagagcagtacgttcagactgaagtgaacggcaaggcaactggctggaag
gctttctataactccggtaagtggttggtacaaaaataa

All links

Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (16)   

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