KEGG   Caenorhabditis elegans (nematode): CELE_C06A1.5
Entry
CELE_C06A1.5      CDS       T00019                                 
Symbol
rpb-6
Name
(RefSeq) putative DNA-directed RNA polymerases I, II, and III subunit RPABC2
  KO
K03014  DNA-directed RNA polymerases I, II, and III subunit RPABC2
Organism
cel  Caenorhabditis elegans (nematode)
Pathway
cel03020  RNA polymerase
cel03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:cel00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    CELE_C06A1.5 (rpb-6)
  09124 Replication and repair
   03420 Nucleotide excision repair
    CELE_C06A1.5 (rpb-6)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cel03021]
    CELE_C06A1.5 (rpb-6)
   03400 DNA repair and recombination proteins [BR:cel03400]
    CELE_C06A1.5 (rpb-6)
Transcription machinery [BR:cel03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol I, II, III common subunits
     CELE_C06A1.5 (rpb-6)
  RNA polymerase III system
   RNA polymerase III
     CELE_C06A1.5 (rpb-6)
  RNA polymerase I system
   RNA polymerase I
     CELE_C06A1.5 (rpb-6)
DNA repair and recombination proteins [BR:cel03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      CELE_C06A1.5 (rpb-6)
SSDB
Motif
Pfam: RNA_pol_Rpb6
Other DBs
NCBI-GeneID: 174630
NCBI-ProteinID: NP_496278
WormBase: WBGene00007355
Ensembl: WBGene00007355
UniProt: Q17684
Position
II:<10579380..>10579793
AA seq 137 aa
MADEDDYQDMDNDDFVDDNEMEDVIEEDPQRPDNEDEDDDNVDENFELFDQGKAVPTSEH
VTTPFMTKYERARVLGTRALQIAMGAPVMVELEGETDPLEIARKELKQRRIPIIVRRYLP
DGSYEDWPTDQLQLADW
NT seq 414 nt   +upstreamnt  +downstreamnt
atggccgatgaggacgattatcaagatatggataatgatgatttcgttgacgacaacgaa
atggaggacgtgatcgaagaagatccacaacgccctgacaatgaggacgaggacgatgac
aacgtggacgagaatttcgagcttttcgatcaaggaaaggctgttccgactagtgagcat
gtgacaactccattcatgacaaaatacgaacgagctcgagttcttggcactcgcgctctc
caaatcgccatgggagctccggttatggttgaacttgaaggagagaccgatccattggag
attgctcgcaaggagcttaaacaacgccgtatcccgatcattgtccgccgctaccttcca
gatggatcatacgaagactggccaaccgatcaacttcaactcgctgattggtag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (15)   
   KEGG ORTHOLOGY (1)   
   RefGene (9)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   WORMBASE (1)   
Protein sequence (3)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (1)   
   Pfam (1)   
All databases (26)   

Download RDF
DBGET integrated database retrieval system