KEGG   Caenorhabditis elegans (nematode): CELE_C44B9.1
Entry
CELE_C44B9.1      CDS       T00019                                 
Symbol
vps-50
Name
(RefSeq) Vps54_N domain-containing protein
  KO
K23288  syndetin
Organism
cel  Caenorhabditis elegans (nematode)
Brite
KEGG Orthology (KO) [BR:cel00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:cel04131]
    CELE_C44B9.1 (vps-50)
Membrane trafficking [BR:cel04131]
 Protein recycling
  Others
   EARP complex
    CELE_C44B9.1 (vps-50)
SSDB
Motif
Pfam: Vps54_N Syndetin_C Seryl_tRNA_N
Other DBs
NCBI-GeneID: 183433
NCBI-ProteinID: NP_499394
WormBase: WBGene00008078
Ensembl: WBGene00008078
UniProt: Q18602
Position
III:10869193..10874813
AA seq 954 aa
MDRFKEQLAKTVNQIGEQFSSDSDVKVLLDNMNEKVMSSYDAPSCSESPPIAPESNSQNS
TPRRVKSKISEEDDVINSIDAAYFIDNDEFDAIDYELKKLCDIEMCYEDIQRERFRLKSQ
HTVVSKKISTLIMQKSSSYTAQVGEMEKIRDEVGSVINEILTIRKALALATSQTRTCLGL
IAYKNKKIVLNQLKMTLTTIKGFHETEQHIRETIEEGNFPLAIQMLIETQIKAGGYAHFT
CVNEVISKLAGMSCLLEAELSAQLSTIAVVFDSEKYRFVYTAYEMLEKTEQVAEKLLTAF
VEAIETTTSAVVLSKLKEEDRLEDSSYTSLCLKLDSEQASITFREMGFVLCRSFQAFHKI
LNFHSSESASEASQSIYKQLLASRTEVFLAATRRLQVLVESRDFVSLKFEHILDIVDTIN
RFNNIGKTYFASTHHQKLAESIEKRTETYFDRYHTERMEELSMFFENESFALCPVPFQFT
IFDLQDFEFLKESVRIESSPKSREESENSEEETVELIGNDWQNPFCQAAIRSRLQSSYSQ
KSERSYSTSSAATEIQNENYNPNLTKQESFSEDPLDEPSGVPPPNLCNTALNLLRFFGRY
LRMTALLPTLCSKSAPAIIDLYEFFFASMCHMFGSEGAEFVGRIPRLVACLDGISRKFTK
DEKANSPFRKVFQKDGDFLSGKMYPSLSPAVQIAFIDNLYGACERIIAVNSIEFVARQLD
LIRPVIESLLLEDTREHLSTILDAFYTQVLPCQADARILIVDASASRSLRLKSLIDSVTS
VKWDIGELRSEHNAYVDLLVQDYELFSIRITAIKETAPVNLSEAMEKFFWERAIYYSFKA
LVQGYGDGGKCSTEGRALMQLDFQMILMKLEPLCGIKPVPHASFVDGYIKAYYLPENGLE
QWIKTHSVRGFSNLINYFPEILQEYSSKQLSSLLGAAAHVSKKARLRILDALKD
NT seq 2865 nt   +upstreamnt  +downstreamnt
atggaccgatttaaggaacaactagcaaaaactgttaatcaaataggcgaacaattttct
tcggatagcgatgtaaaagttttattagataatatgaacgagaaagttatgagctcttac
gatgctccgtcgtgctcggaaagccctccaatagctccagagagtaattcacaaaactca
acgcctcggagagtaaaatcaaaaatttccgaggaagatgacgtcatcaactcgatagac
gccgcgtattttatagataacgatgagttcgatgcgattgactatgaattgaagaagctc
tgtgacatcgaaatgtgctacgaggacatccagcgcgagaggtttcggctaaaatctcag
catactgtggtttccaagaaaatatccacactaatcatgcaaaaatcttcatcctacacg
gcacaggtcggtgaaatggagaaaatccgagacgaagtcggaagtgttatcaacgaaatt
ctgacgatacgaaaagcgctcgcgctggcgacaagccaaactcggacgtgtctcggatta
atcgcttataaaaataagaaaatcgttctaaatcagctgaaaatgacgctcacaacgata
aaaggcttccacgagaccgaacagcacattcgagaaactattgaagaaggaaatttcccg
cttgcaattcaaatgctaatcgaaactcaaataaaagccgggggatacgctcattttaca
tgtgtaaacgaagtaatctcaaagctcgccggaatgagctgtctcctggaagccgaactc
tccgcgcaactctccacaatcgctgtggtcttcgattccgagaagtatcgattcgtgtac
accgcctacgagatgctggagaaaaccgagcaagtcgccgagaagctgctcaccgccttc
gtcgaagccatcgaaaccacaaccagtgcggtggtcctatccaagctgaaggaagaggat
cgtctcgaagattcctcgtacacaagtctttgcttgaagctggacagcgagcaggcttcc
atcaccttccgagagatgggatttgtgctgtgcaggagtttccaggcgtttcacaagatt
ctaaatttccatagctcggaatctgctagtgaagcatcccaaagcatctacaaacaactg
ctggcttctagaacagaagtgtttctagcagcaactcgcaggcttcaagttctagttgaa
tctcgagactttgtcagtttaaagtttgaacatattcttgacatcgtagataccatcaat
cgattcaacaatatcggcaagacctatttcgccagcacacaccatcagaagctcgcagaa
tccattgaaaaacggaccgagacctactttgaccgatatcataccgagcgaatggaggag
ctctcgatgttcttcgaaaacgaatcattcgcattgtgcccagtaccatttcagttcacg
attttcgatttgcaagacttcgagtttttgaaggaatcagttagaatcgaaagttcgccg
aaatccagagaagaatcggagaatagtgaggaagaaaccgtggagctgatcggcaacgat
tggcagaatccattctgccaagctgccatccgatcccgtcttcaatcatcctatagccaa
aagtctgaacggagctattcaacatcttcagcggcaactgaaattcaaaatgaaaactat
aatccgaatctaacgaagcaggagagcttctccgaggatccgctggacgagccttctggt
gtaccacctccgaatctttgcaatactgctctgaatcttttgagatttttcggaagatat
cttcgaatgacagcacttctgccgacactttgctcaaagtctgcaccagcgattattgat
ttatacgagtttttctttgcgtcgatgtgtcacatgttcggctcagaaggcgccgaattc
gttggccgcattccacgcctcgtcgcctgcttggatggtatttcaagaaaattcacaaag
gacgaaaaagccaactctccatttcggaaagttttccagaaggacggtgattttttgagc
gggaaaatgtatccgtcactatcgccggctgtgcaaatcgcgttcatcgataatctctac
ggagcttgtgagcggattattgcagtgaattccatcgaattcgtggcgcgacaactagat
ctcattcgtccagtcatcgaatcactgcttctcgaagacacccgggaacacctctccaca
attctcgacgccttctacacacaagttctcccatgtcaagctgacgcccgaattctgatc
gttgacgcgtcggcttcacgatctctccgactgaagagcctcatcgatagtgtgacgtct
gtgaaatgggacatcggagagctgagaagtgagcacaacgcctacgtggatcttcttgtt
caggactatgaactattttcgattcgaatcaccgctatcaaggagacggcgcctgtcaat
ttgtccgaagcaatggagaaattcttttgggaacgagcgatctattattcgtttaaggca
cttgttcagggatatggagatggtggaaaatgttcgacggaaggccgagcgttgatgcag
ttggattttcagatgattttgatgaagctggagcccctctgcggaatcaagccagttcct
cacgcgagtttcgtcgatggatacatcaaagcctattatctgccggaaaatggtctagaa
cagtggataaagacgcattctgtacggggtttttccaatttaataaattattttcccgaa
attttgcaggaatactcatcaaagcagctgtcttctctactcggtgccgcagctcacgtg
agcaaaaaagcccgacttcggatattggacgctttgaaagactag

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Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (29)   
   KEGG ORTHOLOGY (1)   
   RefGene (23)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   WORMBASE (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (3)   
   Pfam (3)   
All databases (38)   

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