KEGG   Caenorhabditis elegans (nematode): CELE_F57C7.3
Entry
CELE_F57C7.3      CDS       T00019                                 
Symbol
sdn-1
Name
(RefSeq) putative syndecan
  KO
K16336  syndecan 2
Organism
cel  Caenorhabditis elegans (nematode)
Pathway
cel04361  Axon regeneration
cel04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:cel00001]
 09140 Cellular Processes
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    CELE_F57C7.3 (sdn-1)
 09150 Organismal Systems
  09158 Development and regeneration
   04361 Axon regeneration
    CELE_F57C7.3 (sdn-1)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04090 CD molecules [BR:cel04090]
    CELE_F57C7.3 (sdn-1)
   00535 Proteoglycans [BR:cel00535]
    CELE_F57C7.3 (sdn-1)
CD molecules [BR:cel04090]
 Proteins
  CELE_F57C7.3 (sdn-1)
Proteoglycans [BR:cel00535]
 Cell surface proteoglycans
  Syndecan family (transmembrane HSPG)
   CELE_F57C7.3 (sdn-1)
SSDB
Motif
Pfam: Syndecan Pox_Ag35 FAM176 Glycophorin_A Nop14 Cytomega_TRL10
Other DBs
NCBI-GeneID: 181259
NCBI-ProteinID: NP_741894
WormBase: WBGene00004749
Ensembl: WBGene00004749
UniProt: P50605
Position
X:complement(10589770..10593334)
AA seq 288 aa
MILKLNFCLSTYSVLILLSLSTQAFAANQAKTKVVPSSTISTKSLKNGISEQVEGSANIP
GRLADIEVNGSGYPTDDEDGDDVHGSGKPPSSATTKSDKVTSPSHAVVTAKPTTVPTTTA
SFKPPVQPKPKPAANDKEIKVEEDEDDDEDEDEDDEDDEEDFADENIHNDEDFFTTTTTT
TYRPIVVATTSTPRSAATNPPRQQPPMVTSTISSGPFSPFHETLANGFYAAIAGGVLVAV
ITAILLVLFVVFRIRKKDEGSYALDEPKQARPYASYGYTKASTKEFYA
NT seq 867 nt   +upstreamnt  +downstreamnt
atgattctgaaactcaatttctgcctgtcgacttactcggtcctcattctcctatcctta
tctacacaagctttcgccgcaaatcaagcaaaaacgaaagtggtcccttcgtcaactatt
tctacgaaaagcttgaaaaatggaatatctgaacaggtcgaaggaagtgcaaacattccc
ggcaggttagcagacatcgaagtcaatggatccggctacccaaccgacgacgaagacggt
gatgatgtccatgggtcaggcaagccgccatcttcagctaccacaaaatcggacaaggtt
acatctccaagccatgctgttgtgactgcaaagccgacaacggtacctactactacagcg
agcttcaagcctcctgttcagcccaagcctaagccagcggcaaacgacaaggagatcaag
gtcgaggaggacgaggacgatgatgaagatgaggatgaagatgatgaggatgatgaagaa
gattttgctgatgagaatattcataatgatgaagatttcttcacaactactactacaaca
acgtatcgacctattgttgtagctaccacctcaacgccaaggtcagcagccacaaatcca
cctcgacagcagccaccaatggtcacatcaaccatctcatctggaccattctcgccattc
catgagacactggcaaatggcttctatgcagctattgccggaggtgttctcgttgcggtg
attacagccattctactcgtgctctttgtagtctttcgaatcaggaaaaaagatgaaggg
tcatacgcattggatgaacccaagcaagcaagaccatatgcctcgtatggttataccaaa
gcatcgacaaaagaattttacgcgtaa

  All links  
Gene (18)   
   RefGene (13)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   WORMBASE (1)   
Protein sequence (4)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (6)   
   Pfam (6)   
All databases (30)   

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