KEGG   Caenorhabditis elegans (nematode): CELE_H27M09.2
Entry
CELE_H27M09.2     CDS       T00019                                 
Symbol
rpb-5
Name
(RefSeq) DNA-directed RNA polymerases I, II, and III subunit RPABC1
  KO
K03013  DNA-directed RNA polymerases I, II, and III subunit RPABC1
Organism
cel  Caenorhabditis elegans (nematode)
Pathway
cel03020  RNA polymerase
cel03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:cel00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    CELE_H27M09.2 (rpb-5)
  09124 Replication and repair
   03420 Nucleotide excision repair
    CELE_H27M09.2 (rpb-5)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cel03021]
    CELE_H27M09.2 (rpb-5)
   03400 DNA repair and recombination proteins [BR:cel03400]
    CELE_H27M09.2 (rpb-5)
Transcription machinery [BR:cel03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol I, II, III common subunits
     CELE_H27M09.2 (rpb-5)
  RNA polymerase III system
   RNA polymerase III
     CELE_H27M09.2 (rpb-5)
  RNA polymerase I system
   RNA polymerase I
     CELE_H27M09.2 (rpb-5)
DNA repair and recombination proteins [BR:cel03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      CELE_H27M09.2 (rpb-5)
SSDB
Motif
Pfam: RNA_pol_Rpb5_C RNA_pol_Rpb5_N Mrr_cat
Other DBs
NCBI-GeneID: 172412
NCBI-ProteinID: NP_491961
WormBase: WBGene00019246
Ensembl: WBGene00019246
UniProt: Q9N5K2
Position
I:6850409..6851253
AA seq 211 aa
MADDELETYRLWRIRKTVLQMVHDRGYLVAQDELDQPLETFKVQYGDRPSEKKPARSDLT
ILVAHNDDPADQMFVFFPEDAKIGIKTIKAICQQMQEQNISRAIIVVQTGMTPSAKQSIG
DMAPKYMLEHFLEAELMVNITEHELVPEHVVMTAEEKAELLARYKLKDSQLPRIQQCDPV
ARYFGLRRGQVVKIIRPSETAGRYITYRLVV
NT seq 636 nt   +upstreamnt  +downstreamnt
atggctgacgacgagcttgagacctatagattgtggagaatccgtaaaacagttcttcag
atggttcacgatcgtggttatctcgtagctcaagatgaattagatcaaccattggaaaca
ttcaaagtgcagtacggagatcgtccctctgaaaaaaagccggctcgctcagatctgaca
attctcgtggctcacaacgacgatccagccgatcaaatgtttgttttcttcccagaggac
gccaaaattggaatcaaaactattaaagctatctgccagcaaatgcaagaacagaatatc
tcccgtgctatcattgtcgtacaaaccggaatgactccaagcgccaaacaatccattggc
gacatggccccaaagtacatgttggagcactttttagaggctgagctcatggtaaacatc
acagaacatgagttggtaccagaacatgtcgtcatgacagccgaagagaaagcagaacta
cttgctagatacaaacttaaggattctcagttgccacgtatccaacaatgtgatccggtc
gctcgttattttggtctccgccgtggacaagttgtcaaaatcattcggccatcggaaact
gctggaagatatatcacttatcgtcttgtggtctaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (43)   
   KEGG ORTHOLOGY (1)   
   RefGene (37)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   WORMBASE (1)   
Protein sequence (3)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (3)   
   Pfam (3)   
All databases (56)   

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