KEGG   Caenorhabditis elegans (nematode): CELE_M18.7
Entry
CELE_M18.7        CDS       T00019                                 

Gene name
aly-3
Definition
(RefSeq) FoP_duplication domain-containing protein
  KO
K12881  THO complex subunit 4
Organism
cel  Caenorhabditis elegans (nematode)
Pathway
cel03013  RNA transport
cel03015  mRNA surveillance pathway
cel03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:cel00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    CELE_M18.7 (aly-3)
  09122 Translation
   03013 RNA transport
    CELE_M18.7 (aly-3)
   03015 mRNA surveillance pathway
    CELE_M18.7 (aly-3)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cel03019]
    CELE_M18.7 (aly-3)
   03041 Spliceosome [BR:cel03041]
    CELE_M18.7 (aly-3)
Messenger RNA biogenesis [BR:cel03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     CELE_M18.7 (aly-3)
    TREX complex
     CELE_M18.7 (aly-3)
Spliceosome [BR:cel03041]
 Complex C
  Other components
   EJC/TREX
    CELE_M18.7 (aly-3)
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    CELE_M18.7 (aly-3)
SSDB
Motif
Pfam: FoP_duplication RRM_1
Other DBs
NCBI-GeneID: 178157
NCBI-ProteinID: NP_001076697
WormBase: WBGene00000122
Ensembl: WBGene00000122
UniProt: Q21559
Position
IV:join(12123314..12123521,12123572..12123691,12123739..12123830,12124247..12124373,12124424..12124599)
AA seq 240 aa
MVKATNVDLSLEDIISKTRKTTGSIQKKSFGGARRGNTRPTGLPRRSGGSGGWKDLDAVQ
NHGISSRGNDSKVIRVNISNLAPTVISSDLEELFGDYRLSSVSVNFNEHGDSLGTGDISL
TKRDAERLVQKFSGVALDGKIMKFAVIDSSNMAGRVDFGNRSRSSPGRSSRGFQSGPRRN
NGKPEDFLRDGVHAGDIKRGGAGRGGFRKGGRGGARDAKPKKTEAELDAELEAYMAKRNA
NT seq 723 nt   +upstreamnt  +downstreamnt
atggttaaggctaccaatgtcgatttgtctcttgaggacatcatctctaaaaccagaaag
acaactggaagcattcaaaagaaatccttcggaggagctcgacgaggaaatacgagaccc
actggacttccacgccgctccggcggaagtggtggatggaaagacttggacgcggttcag
aatcatggaatttcaagcagaggaaatgatagcaaggttattagagtaaatatctctaat
cttgccccaacagtcatttcaagcgatttggaggaactcttcggcgactacagactcagc
tcagtttcggtcaacttcaacgagcatggtgattcattgggtactggtgacatttcgctc
accaaacgtgatgctgagagacttgttcagaagtttagcggtgtcgctctagatggaaag
atcatgaaattcgccgtcattgattcgagcaacatggctgggagagtcgattttggaaac
agatctcgtagttcaccgggaagatcatctcgtggattccaatcgggtcctcgcagaaac
aatggcaaaccagaagatttcctccgcgacggagtgcacgccggtgacatcaagagaggc
ggagctggtcgaggtggattccgcaagggaggccgtggtggagctcgtgatgcaaaacca
aagaagaccgaagctgaactcgacgcggagctcgaagcctacatggcgaagcgaaatgcc
tga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (17)   
   KEGG ORTHOLOGY (1)   
   RefGene (11)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   WORMBASE (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (2)   
   Pfam (2)   
All databases (30)   

Download RDF
DBGET integrated database retrieval system