KEGG   Caenorhabditis elegans (nematode): CELE_T07D4.4
Entry
CELE_T07D4.4      CDS       T00019                                 
Symbol
ddx-19
Name
(RefSeq) RNA helicase
  KO
K18655  ATP-dependent RNA helicase DDX19/DBP5 [EC:5.6.2.7]
Organism
cel  Caenorhabditis elegans (nematode)
Pathway
cel03013  Nucleocytoplasmic transport
cel03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:cel00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    CELE_T07D4.4 (ddx-19)
   03015 mRNA surveillance pathway
    CELE_T07D4.4 (ddx-19)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cel03019]
    CELE_T07D4.4 (ddx-19)
Enzymes [BR:cel01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     CELE_T07D4.4 (ddx-19)
Messenger RNA biogenesis [BR:cel03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Other transport factors
     CELE_T07D4.4 (ddx-19)
SSDB
Motif
Pfam: DEAD Helicase_C Nucleoporin_FG AAA_19
Other DBs
NCBI-GeneID: 174418
NCBI-ProteinID: NP_495891
WormBase: WBGene00011580
Ensembl: WBGene00011580
UniProt: Q22308
Position
II:<8884899..>8889702
AA seq 1022 aa
MADWGIAFDEQCRSEGLEVPEKTEKVQSGSEMDQNEENKGSNGWGISRGGMFGGPKASNA
PPPQTSFGSTSGTRVGGSFGGQAGVDGRGAPLGSAEELIGGGNIISVGIHKEKPACKRGG
GFGTNRSMAPCPPAIIKNNHEGGRFGVLAPRTLSGSIPQTSTNLEDSTPKTSTGGRFGAS
ISQGGAFGAKTQSSSVAPSVGGGFGVKSPNIVSNDMPKVPVMKSVGGGFGSSMKSPATTG
GSFGSSTVVASIRSEESFGIKSSASAGGSFNSSSASASQSRTVASFGSKPSNENISSNSS
ALSSSSSCFAAKPTSTSAGGSFGNQPSSFSSKPSFGGAFGASTSVTGSSSMGGSFGNKST
KVPDVESLSPPEILRNPSNTSGGAFGSKPSFAASSSELPANKHVVGGGFGRSTAPTVNTS
VGNESGRLPFVETRNPNTEQETSSSVRPYGANFNSKSEPAQKNPFGGNSSSTKPEFKENE
MKNSSVPIMPGQSQPMRGGFQGAYRGGRGSGGGQMDFGAPGQGQSMGRGRGQQNPAFVPR
PRDTPPQYGGHQAAQQFVKPDSKYKFTKPATEEAHEQVPVPADIALLNKFIQKEVKMMKD
VVVDVQRQDPKSPLYSISSFRELRLKPEVLKALDTMNFQFPTRIQETALPLLLMEPPSNL
IAQAQSGTGKTAAFVLTMLCRIDVNLMCPQCICLAPTLELAKQIGEVVEKMGKFIDNLKI
HYAIKGGNMAAMRGRKLTEQIVIGTPGITRDYLQKYKCIDPSKIRCLVLDEADVMIYHQG
FTDISTTIYNMVEDASDSVQSMLFSATYDEPVINFATKIIKNAIVVMLKREEQALPNIKQ
FYVQCACRDSKYAAIVNLYSGLAVASSVIFCHTKASVMWLYENMRARGHQVDVLHGDMTV
VERADTIIHFKRGDFKVLITTNVFARGIDVAQVSVVINYDLPIKYTDEGTPMVVDGFTQP
DCETYLHRIGRTGRFGKTGIAINLIDSEDSMNMINVLENHFQMKIARMDPSNLVELEAIE
MA
NT seq 3069 nt   +upstreamnt  +downstreamnt
atggctgattggggtattgcattcgacgagcagtgtcgatcggaagggcttgaagtgcca
gaaaagaccgaaaaggtgcaatcaggctcggaaatggatcaaaatgaagagaataaagga
tcaaatggatggggaattagccgaggaggcatgttcggcggaccaaaagccagtaatgct
ccaccacctcaaacttcattcggatcaacttcgggaacccgtgttggtggttcattcgga
ggccaagcaggggtggatggccgtggtgcaccacttggttcagcagaagaactcattgga
ggaggtaatataatttctgttggaattcacaaagaaaaacctgcatgtaaacgtggtgga
ggctttggcactaaccgcagcatggcaccttgtccaccagcaataattaagaataaccat
gaaggaggacgttttggagttttagccccgagaacgctgagtggatcgattccgcaaact
tctacgaatcttgaagattctacaccaaagacatccactggaggacgttttggagcatca
atctctcaaggtggagcattcggtgcaaaaacacaatcatcgagcgttgctccgtctgtt
ggtggaggatttggagtgaaatctccgaatattgtcagcaacgatatgcctaaagttccg
gtaatgaaatcggttggtggcggatttggttcatctatgaagtcaccagcgacaaccgga
ggaagttttggttcctctacagttgtagcatctattcgttcagaagaaagttttggaatc
aagtcttccgcttcggctggagggtctttcaacagctcttcggcatcagcatcccaatcg
agaactgtggctagctttggatcgaaaccatcaaacgagaatatctctagcaattcttct
gcactttcttcatcttcaagctgttttgcagcaaaaccaacttctacttcagctggagga
agttttggaaaccaaccgtctagtttctcatcgaagccgtcatttggtggtgccttcgga
gcttcaacatccgtcacaggaagttcttcgatgggaggatctttcggaaacaagtccaca
aaagttccagatgttgaaagcctatcaccaccagaaatcttaagaaacccatcaaatacc
tcaggcggtgctttcggatcgaaaccatcttttgctgcttcatcgtctgaacttcctgcc
aataagcatgtcgtcggtggaggtttcggtagatcaactgctccaacggtcaatacctca
gttggtaatgagtctgggcgtctgcctttcgtagaaacacgaaatccgaatactgaacaa
gaaacatcgagctccgtcagaccatatggagcgaatttcaattcaaaatccgaacctgct
caaaagaatccatttggcggaaattcaagctctaccaaaccagagttcaaggaaaatgaa
atgaagaactcgagtgttccaatcatgccaggacaatcacaaccaatgagaggaggattc
caaggagcgtacagaggaggacgtggatcaggcggagggcaaatggatttcggcgccccc
ggtcaaggacaatctatgggacgtggaagaggacaacaaaatccagcttttgttccacga
ccaagagatacaccacctcagtacggtggacaccaagctgcacaacaatttgtgaaaccg
gattcgaagtacaagttcacgaaaccggcaacagaagaagctcatgaacaagttccagtt
ccagcagatattgctttgctaaataagttcattcaaaaggaggtgaagatgatgaaagac
gttgtcgttgacgtgcaaagacaagacccaaaatctcctttgtactcaatctcatccttc
cgtgaacttcgtttaaaacccgaagtactcaaggctcttgacacgatgaatttccagttc
ccaactagaattcaagaaacagctttaccacttcttcttatggagccaccatccaacctt
attgctcaagcccaatccggtaccggaaaaactgctgcatttgtgctcaccatgctctgc
aggattgatgtcaatctgatgtgcccccagtgcatttgtttggcaccgactcttgaattg
gccaagcagatcggagaagttgttgagaagatgggaaaattcattgataatttgaaaatt
cactacgcgatcaaaggaggaaatatggctgcaatgagaggacgaaagcttactgaacaa
attgttattggaactccagggatcactcgcgactaccttcaaaagtacaagtgcattgat
ccgagcaagatccgttgcttggtacttgacgaagctgatgtgatgatttatcatcaagga
ttcactgatatctcaactacaatctataatatggtcgaagatgcttcagattctgtccaa
tcaatgttgttctcagccacgtacgacgaaccagtgatcaatttcgcaacaaaaatcatc
aagaatgcaattgtagtaatgttgaaacgtgaagaacaagcattgccgaacattaagcag
ttctacgttcaatgcgcctgtagagattcgaaatatgcggctatcgtcaacctttacagt
ggactcgctgtcgcctcatccgtcattttctgtcacacgaaggctagtgttatgtggttg
tatgagaacatgagagcaagaggacatcaagttgatgttttacatggagatatgactgtt
gtcgagagagctgatacgatcatccatttcaagcgcggcgacttcaaagttctgatcacg
acgaacgtgtttgctcgtggaattgatgtagcgcaggtgtcggtggtgattaattacgat
cttccgatcaagtacaccgatgaaggaactccgatggtggtggatggattcactcaacct
gattgtgaaacttacctccaccgtattggaagaactggaagatttggaaagactggtatt
gccattaatttgatcgattcagaagactcgatgaacatgattaatgtgctcgaaaatcat
ttccagatgaagatcgctcgaatggatccatcgaatttggtagagctagaagccatagaa
atggcataa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (29)   
   KEGG ORTHOLOGY (1)   
   RefGene (23)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   WORMBASE (1)   
Protein sequence (6)   
   UniProt (1)   
   RefSeq(pep) (5)   
DNA sequence (5)   
   RefSeq(nuc) (5)   
Protein domain (4)   
   Pfam (4)   
All databases (50)   

Download RDF
DBGET integrated database retrieval system