KEGG   Caenorhabditis elegans (nematode): CELE_Y54E10BR.6
Entry
CELE_Y54E10BR.6   CDS       T00019                                 
Symbol
rpb-7
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB7
  KO
K03015  DNA-directed RNA polymerase II subunit RPB7
Organism
cel  Caenorhabditis elegans (nematode)
Pathway
cel03020  RNA polymerase
cel03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:cel00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    CELE_Y54E10BR.6 (rpb-7)
  09124 Replication and repair
   03420 Nucleotide excision repair
    CELE_Y54E10BR.6 (rpb-7)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cel03021]
    CELE_Y54E10BR.6 (rpb-7)
   03019 Messenger RNA biogenesis [BR:cel03019]
    CELE_Y54E10BR.6 (rpb-7)
   03400 DNA repair and recombination proteins [BR:cel03400]
    CELE_Y54E10BR.6 (rpb-7)
Transcription machinery [BR:cel03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     CELE_Y54E10BR.6 (rpb-7)
Messenger RNA biogenesis [BR:cel03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     CELE_Y54E10BR.6 (rpb-7)
DNA repair and recombination proteins [BR:cel03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      CELE_Y54E10BR.6 (rpb-7)
SSDB
Motif
Pfam: SHS2_Rpb7-N S1
Other DBs
NCBI-GeneID: 171877
NCBI-ProteinID: NP_491093
WormBase: WBGene00021845
Ensembl: WBGene00021845
UniProt: Q9N3C9
Position
I:complement(<3031338..>3032938)
AA seq 197 aa
MRQGRLLAHSSSRWHATGALTLRMFFHLSLDHEVCLHPKYFGPNLNETIKMKLFNEVEGT
CTGKYGFVIAVTTIDTIGHGLIQPGRGFVIYPVRYKAIVFRPFKGQVVDGVVTQVNKVGI
FCDIGPLSCFISRHCIPPDMEFDPNSEKPCYKTNDEANVIRNDDEIRVKLIGTRVDANDI
FAIGTLMDDFLGLCQAE
NT seq 594 nt   +upstreamnt  +downstreamnt
atgcgccaaggacgcctgctggcgcattcttcgtctcgttggcacgcaactggtgcgctt
acgcttcgtatgttcttccacttgtcactcgaccatgaagtctgcctccatccgaaatat
ttcggtccaaacctgaacgaaaccatcaaaatgaagctgttcaacgaagtcgagggaacg
tgcacaggaaagtacggattcgtcatcgcagtcaccacaatcgacacgatcggccacggc
ctgatccagcctggccgtggattcgtcatctacccggtccgttacaaggccatcgtgttc
cgcccgttcaaaggacaagtcgtcgatggagtcgtcacacaggtcaataaagtcggcatt
ttctgtgatatcggaccactttcatgcttcatcagtcgtcattgtattccaccagacatg
gaattcgatccgaacagtgagaaaccgtgctacaagaccaatgatgaggcgaatgtgatt
cggaatgatgatgagatccgtgtgaagctcatcggaacacgtgtcgatgctaacgacatt
tttgccatcggaaccttgatggacgattttctcggactgtgccaagcggaatga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (12)   
   KEGG ORTHOLOGY (1)   
   RefGene (6)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   WORMBASE (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (24)   

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