KEGG   Caenorhabditis elegans (nematode): CELE_Y65B4A.6
Entry
CELE_Y65B4A.6     CDS       T00019                                 
Symbol
eif-4A3
Name
(RefSeq) RNA helicase
  KO
K13025  ATP-dependent RNA helicase [EC:3.6.4.13]
Organism
cel  Caenorhabditis elegans (nematode)
Pathway
cel03013  Nucleocytoplasmic transport
cel03015  mRNA surveillance pathway
cel03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:cel00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    CELE_Y65B4A.6 (eif-4A3)
  09122 Translation
   03013 Nucleocytoplasmic transport
    CELE_Y65B4A.6 (eif-4A3)
   03015 mRNA surveillance pathway
    CELE_Y65B4A.6 (eif-4A3)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cel03019]
    CELE_Y65B4A.6 (eif-4A3)
   03041 Spliceosome [BR:cel03041]
    CELE_Y65B4A.6 (eif-4A3)
   03009 Ribosome biogenesis [BR:cel03009]
    CELE_Y65B4A.6 (eif-4A3)
   03012 Translation factors [BR:cel03012]
    CELE_Y65B4A.6 (eif-4A3)
Messenger RNA biogenesis [BR:cel03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     CELE_Y65B4A.6 (eif-4A3)
   mRNA cycle factors
    Stress granule specific factors
     CELE_Y65B4A.6 (eif-4A3)
Spliceosome [BR:cel03041]
 Complex C
  Other components
   EJC/TREX
    CELE_Y65B4A.6 (eif-4A3)
Ribosome biogenesis [BR:cel03009]
 Eukaryotic type
  90S particles
   Helicases
    CELE_Y65B4A.6 (eif-4A3)
Translation factors [BR:cel03012]
 Eukaryotic type
  Initiation factors
   eIF-4
    CELE_Y65B4A.6 (eif-4A3)
SSDB
Motif
Pfam: DEAD Helicase_C ResIII AAA_19 AAA_22 AAA_30
Other DBs
NCBI-GeneID: 190485
NCBI-ProteinID: NP_001370755
WormBase: WBGene00022029
Ensembl: WBGene00022029
Position
I:complement(<629465..>636345)
AA seq 399 aa
MAENKKKNDDMATVEFESSEEVSIIPTFDKMGLREDLLRGIYAYGFEKPSAIQQRAIPAI
LKARDVIAQAQSGTGKTATFSISVLQSLDTQVRETQALILSPTRELAVQIQKVVLALGDY
MNVQCHACIGGTNLGEDIRKLDYGQHVVSGTPGRVFDMIRRRNLRTRAIKLLVLDEADEM
LNKGFKEQLYDIYRYLPPGAQVVLLSATLPHEILEMTSKFMTDPIRILVKRDELTLEGIK
QFFVAVDREEWKFDTLIDLYDTLTITQAVLFCNTRRKVDWLTDKMKEANFTVSSMHGDME
QKDRDEVMKEFRAGTTRVLISTDVWARGLDVPQVSLVINYDLPNNRELYIHRIGRSGRFG
RKGVAINFVKQDDVRILRDIEQYYSTQIDEMPMNIADII
NT seq 1200 nt   +upstreamnt  +downstreamnt
atggcggaaaataaaaagaaaaacgacgatatggcgactgtggagttcgagtcgtctgag
gaggtctcaattatcccaacttttgacaaaatgggcttgagagaagacttgcttcgtgga
atctacgcgtacggcttcgaaaagccatctgccatccagcaacgcgccatccccgcaatt
ctcaaggctcgtgacgtcatcgctcaagctcaatccggaacaggaaaaacggcgacattc
tcgatctccgtactccaatcgctagacacccaggtccgcgagacccaagctctgattctc
tcgccgacacgagagctggcagttcaaattcaaaaagtcgtgctggcgctcggcgactat
atgaatgtccagtgccacgcctgtatcggaggcaccaatctcggcgaggacatccgaaag
ctcgactacggccagcacgtggtttccggtactccgggacgcgttttcgacatgattcgc
cgtcgaaacctgcgcacccgcgccatcaagcttctcgtgctcgatgaagccgacgagatg
ctcaacaaggggttcaaggagcagctttacgatatctatcgctatctaccgcccggagcc
caggtggtgctgctctccgcgacgcttcctcatgagattctggagatgacgagtaaattc
atgacggatccgattcggatccttgtgaagcgtgacgagttgacactggaaggcatcaag
cagttcttcgtcgcagttgatcgggaggagtggaagttcgacacgcttatcgatctctac
gacaccttaaccatcactcaggcggtgttgttctgtaatacacgtagaaaggtggactgg
ttgactgataagatgaaggaggccaactttaccgtctcatcgatgcatggagatatggag
cagaaggatcgtgatgaggttatgaaggagtttagagctggaaccactcgtgtcctcatt
tctactgatgtttgggcgagaggacttgatgttccgcaagtgtccttggtaatcaactac
gatttgccgaacaaccgtgagctctacatccatcgtatcggccgttcgggacgtttcggc
cgcaagggagtcgccatcaatttcgtcaaacaggacgacgtacgaattctccgcgacatt
gagcagtactactcgacacaaatcgacgagatgccaatgaacattgctgacattatttaa

  All links  
Ontology (5)   
   KEGG BRITE (5)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (25)   
   KEGG ORTHOLOGY (1)   
   RefGene (19)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   WORMBASE (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (6)   
   Pfam (6)   
All databases (45)   

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