KEGG   Cellvibrio sp. PSBB006: CBR65_10105
Entry
CBR65_10105       CDS       T04891                                 
Name
(GenBank) ribonuclease R
  KO
K12573  ribonuclease R [EC:3.1.13.1]
Organism
cell  Cellvibrio sp. PSBB006
Pathway
cell03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:cell00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    CBR65_10105
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cell03019]
    CBR65_10105
   03016 Transfer RNA biogenesis [BR:cell03016]
    CBR65_10105
Enzymes [BR:cell01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     CBR65_10105
Messenger RNA biogenesis [BR:cell03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     CBR65_10105
Transfer RNA biogenesis [BR:cell03016]
 Prokaryotic type
  tRNA degradation factors
   CBR65_10105
SSDB
Motif
Pfam: RNB CSD2 OB_RNB S1 HTH_12 CSD RNase_II_C_S1 OB_Dis3 Rho_RNA_bind
Other DBs
NCBI-ProteinID: ARU27752
UniProt: A0A1Y0FWB2
Position
complement(2435213..2437879)
AA seq 888 aa
MTKRKLPKNDPFAQREAEKYENPIPSREYILELLDKAAYPVTHPEMCDMLNLTGEDDVEA
LRRRLIAMTRDGQLISNRRDAYVRPDKIDVVRGRVQGHRDGYGFVIPAEGGEDIYLHNRQ
MRRVFDGDEVLVRMAGHQYRGKEEGAIVEVLSRNTKQLAGRFFNEEGVQFVRPENVRITQ
DIMIPFGAWGGAEPGQIVVVEITQQPDKNRPPVGRVVRVLGNHMAPGMEIELAIQSHGIP
SIWPPSVEAEAAGIPGEVQEADKLHRVDVRHLPFVTIDGEDARDFDDAVLCERRKGGWRL
YVAIADVSHYVHIDSALDKEACLRGNSVYFPDFVVPMLPEALSNGLCSLNPQVDRLCMVC
EMTITDAGKISGYQFYEGVMHSHARLTYTQVGEILAHPDDDQYPLRQQFRAVLPQLHRLH
DLYKCLREARDDRGAIDFETVETRIVFNDERKIERIVPVRRNDAHKLIEECMLCANVCAA
KFLQKHNLTGVYRVHEGPTEQKLTNLREFLGELGLSLAGGDAPTSLDYQALMEQIQNRSD
SNMIQTVMLRSLRQAMYQVENLGHFGLGYEAYTHFTSPIRRYPDLLVHRAIRSVIRSELP
SKQVQRVDGASLLKQRAIYPYSPADMAGLGEHCSMTERRADEATRDVVSWLKCEFLRDQV
GSVFPGIVSAVTGFGLFIELKELYVEGLIHVTALPHDYYRFEAAQHRLVGERTRKVFGLG
DELVVRVVRVDLDNRKIDFELESVVAHRAKSSKTKTAEKPAKRSKATTKSAKGKKAQEPR
VAPTKAKSRQAKVETATGSTKAGKKKSTAGSASAKSTQVDVAPTKSRRTRTDSTAGVTDG
NQDKKARRKTKTESVPAAQASAPAKGKSILSSATAGVKKALAKFKKEK
NT seq 2667 nt   +upstreamnt  +downstreamnt
ttgacgaaacgcaaactgcccaaaaacgaccctttcgcccagcgcgaggccgaaaaatac
gaaaaccccatccccagccgtgaatatattcttgaattgttagataaagccgcctatccg
gttacccaccccgagatgtgcgacatgctcaatttgaccggtgaggatgatgtcgaagcg
ctgcgccgccgcctgatcgcgatgacgcgggatggccaattgatcagcaatcggcgtgac
gcctatgtccggccggacaagattgacgtggtgcgcggccgggtacaggggcatcgcgac
ggctacggctttgtgattcccgctgaaggtggcgaagacatctatctccacaaccgacaa
atgcgtcgtgtgtttgatggtgacgaagtgctggtacgcatggccggccatcaataccgg
ggtaaggaagaaggcgctatcgtcgaggtgttatcgcgcaacaccaaacagttggcgggg
cgcttctttaatgaggaaggcgtgcaatttgtgcggccggagaatgtgcgcattacccag
gacatcatgattcccttcggtgcctggggtggtgcagaacccgggcaaattgtggtggtg
gagatcacccagcaaccggacaagaatcgtccgccggtagggcgggtcgtccgtgtgctc
ggcaaccacatggcgccgggcatggagattgagctggcgatccagtcccacggcatcccc
agtatctggccgccgtcggttgaggccgaagcggcaggtattcccggcgaggtgcaggag
gctgacaagctgcatcgtgtcgatgtgcgccacctcccgttcgttaccattgacggcgaa
gatgcgcgcgactttgatgacgcggtgttatgtgagcggcgcaaaggcggttggcgtttg
tatgtcgcgattgctgatgtttcgcattatgtacatatcgacagcgctctggataaagaa
gcctgtctgcgcggtaactctgtttatttccccgacttcgtcgtgcccatgctgcccgag
gccttgtccaatggcctgtgttcgctcaacccacaggtagaccgcttgtgtatggtatgc
gagatgaccatcaccgatgcgggcaagatttccggttatcaattttatgaaggggtgatg
cactcccacgcacgcctgacctatacgcaggtgggcgagatcctggcgcatccggatgat
gatcaatatccactgcgtcagcagttccgcgcggtgttgccgcaattgcatcgtctgcat
gacttatataagtgcctgcgcgaagcgcgcgatgaccgtggtgcgatcgattttgaaacg
gtagagacgcgcattgttttcaatgatgagcgcaagatcgaacgcatcgtaccggtgcgt
cgtaatgatgcgcataagttaattgaagaatgtatgctctgcgccaatgtgtgtgcagcc
aagtttctacaaaagcacaatctgaccggcgtgtatcgggtgcacgaaggccctaccgaa
caaaagctgactaatctgcgtgaatttttgggtgagttgggcttatcgcttgcgggtggc
gatgcgccaacttcgctggattaccaggccttgatggagcaaatccagaatcgttcagac
agcaacatgatccaaaccgtaatgttgcgcagtctgcgccaggcgatgtatcaggtggaa
aacctcggccactttggtctgggctatgaggcctacacacatttcacctcgccgattcgc
cgttaccctgatctgttagtacaccgtgcgattcgttcggtcattcgcagtgagctgccc
tcgaaacaggtgcagcgcgttgacggtgccagcctcctgaagcagcgcgctatctacccc
tattcgcccgccgatatggccgggctgggcgagcactgttccatgactgagcggcgcgcc
gatgaagcaacacgcgatgtggtgagctggctcaaatgtgaattcctgcgcgatcaggtt
ggttcggtattccccggcattgtcagcgcggtgaccgggtttggtttgtttatcgaatta
aaagaactgtatgtcgaagggcttattcacgtcactgccttgccgcatgattactatcgc
tttgaagccgcacaacatcggctggtaggtgagcgcacgcgcaaagtcttcggcttgggc
gatgaactggtggtgcgtgtcgtgcgtgttgacctcgacaatcgcaagatagattttgag
ctggaatctgttgtggcgcatcgtgcaaaatcgagcaaaaccaaaacagcagaaaaaccc
gccaagcgcagcaaagcgacgaccaagtcagcgaaaggcaaaaaagcgcaagagcctcgt
gttgctccaaccaaagccaaatccagacaggccaaggtagagacagcaacagggtcgacc
aaggccggcaagaaaaaatccacggcaggcagcgccagtgcaaagtcgacacaagttgat
gttgcaccgaccaaaagccgccgtacccgcacggactcaacagctggagtgacggatggc
aatcaagataaaaaagctcggcgcaagacgaagacagaatcagttcctgcggctcaagca
agtgcgccagctaaaggcaagtcaattctttcgtccgcgacagctggcgttaaaaaagcg
ctggctaaatttaagaaggagaagtag

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (9)   
   Pfam (9)   
All databases (20)   

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