KEGG   Crinalium epipsammum: Cri9333_0162
Entry
Cri9333_0162      CDS       T02373                                 
Name
(GenBank) putative exonuclease, RecJ
  KO
K07462  single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
cep  Crinalium epipsammum
Pathway
cep03410  Base excision repair
cep03430  Mismatch repair
cep03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:cep00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    Cri9333_0162
   03430 Mismatch repair
    Cri9333_0162
   03440 Homologous recombination
    Cri9333_0162
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:cep03400]
    Cri9333_0162
DNA repair and recombination proteins [BR:cep03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    RecJ
     Cri9333_0162
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecFOR pathway proteins
     Cri9333_0162
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      Cri9333_0162
SSDB
Motif
Pfam: DHH DHHA1 RecJ_OB HTH_11 HTH_PafC
Other DBs
NCBI-ProteinID: AFZ11162
UniProt: K9VUL4
Position
201210..203711
AA seq 833 aa
MPDQLQWQIEQLIQPPATFIIAVKRHAPGLDGRYAAQLLWQRGIRDTEKLAGYLNPNSYQ
PASPFEFGQEMHFCVERLQQARQAGEVVAIWGDFDADGITSTSVLWEGLGQFFTKNQQLR
YYIPNRLTESHGLNNSGIDQLAKAGTTLIITCDTGSTNISEIEYAQQLGIDVIVTDHHTL
PPERPPVVAIINPRYLPTNHPLFNLSGVAVAYKVVEALYETLPDVPQQPVENLLDLVAIG
LIADLVQLSGDCRYLAQKGIERLQQQTKQPTRPGVAKLLELCQRSGDRPTDISFGLGPRI
NAVSRIQGDASFCVELLTSKNKQRCEQLALETELANARRKSLQKDVTQQVKDKLSQLDLS
TTSVIVLVDSQWSSGVLGLVAGQVAQEYGRPTIILSTESDNNFSEKVEQGSRGDLDNNHS
PQPTPHVNTPHASNLTPDSSLLTPHPSPLTPLARGSARSVNNIDLYQLVRSQAHLLHRFG
GHPFAAGLSIPIENIPLFTEAINQQLRQLSLASGALMMPVIQADLTVTVAELGKELFREL
KLLEPCGMGNPVPKLLIKNCSFKNVWNRNTQDAKGKKIQYIKTDFEIVDLTTDKGFPGLW
WGHYKDEVPTGRCDAIVELDYNNYKQRPEVRLIAVRPTVEDRQFSTNVQLDWILDWRNLS
DEEKSINTQSTSALSHQSSALILEECPTRWDDLQVWLRRAIQTNNKLAIAYPQPEQLPAN
KIWEQLVGIAKYLSRTGKTVTLDQIQDKLGVSDRALQLGLRTLTQLGFQITTFDNHIQII
WSSDSYFHHTEDQLTSASEQFLAAVAEEQFYQRYFYVVPLTTIQSMARETVYR
NT seq 2502 nt   +upstreamnt  +downstreamnt
atgcctgaccaactacaatggcaaattgagcagctaattcaaccccctgctaccttcatt
atagcagttaaacgtcatgcacctggattagatggacgttacgcagcacaattattatgg
caacgcggaattagagatactgaaaaactggcaggatatttaaatccaaactcatatcaa
cctgcaagtccgtttgaatttgggcaggaaatgcacttttgcgtggaaagattgcaacaa
gcgcgtcaagcaggcgaagtagttgcgatttggggggactttgacgcagatggaattaca
tcaactagcgttttgtgggaaggactaggacaattttttactaaaaatcagcagctacga
tactatattcctaatcgcctgacagaatctcacggactgaacaattcaggaattgatcaa
cttgcgaaagctggaactactttaattattacttgtgatacgggcagtacaaatattagt
gaaatcgagtatgcccaacaattagggattgatgttattgttacagaccaccatactcta
ccaccagaacgcccgcctgtagtagcaattattaacccccgctatttaccaacaaatcac
cctctgtttaatctttctggtgttgctgttgcttataaggtggtggaagcactttatgaa
actttgcctgatgttccgcaacaaccagttgaaaatttattagatttagtagctattggt
ttaattgctgatttagtacaactaagtggtgattgtcgctatttagcacaaaaaggtatt
gaacgtttacaacagcaaactaaacaaccaactcgtccaggtgtggcgaagctattagaa
ttatgccagagaagtggcgatcgccccacagatatttcctttggtcttggtcctagaatt
aatgctgttagtcgtatccaaggtgatgcttctttttgtgttgaattacttaccagtaaa
aataaacagcgttgtgaacaacttgcgctagaaaccgaattagctaacgcccgtcgcaag
tctttacaaaaagatgttactcagcaagtaaaagataagttatctcaactcgacttatca
accaccagtgtaattgttcttgtagattcccaatggtctagcggtgttttaggtttagtt
gctggtcaagtcgcccaggaatacggcagacctacgattatattaagtacagaaagtgat
aataattttagtgaaaaagtggagcaggggagcagaggagatttagataataatcactcg
ccccaacctacgccccatgttaacactcctcacgcttcaaaccttacacctgactcttca
ctcctcacccctcacccctcacccctcacccctttagctagaggttcggcgcgttctgta
aataatattgatttatatcagttagtgcgatcgcaagcacatttattacatcgcttcggt
ggtcatccttttgctgctggcttaagtattcctattgaaaatattcctttatttacagaa
gcaattaatcaacagttacggcagctaagtcttgcttctggcgcgttaatgatgccagta
attcaagcagatttaactgtaaccgtagcggagttaggtaaagaattatttagggaatta
aaactgctagaaccttgtggtatgggaaatcctgttccaaagctattaattaaaaattgc
tcgtttaaaaatgtttggaatcgtaatactcaggatgcgaaaggcaaaaaaattcaatat
attaaaactgactttgaaatagtagatctcaccaccgataaaggttttcctggtttgtgg
tggggacactataaagatgaagtacccacaggaagatgtgatgctattgtggaacttgat
tataataactacaaacaacgtccagaagtgcgcttaattgctgtacgtcctactgtcgag
gatcgtcaatttagcaccaatgtacagttagattggattttagactggcgcaaccttagc
gatgaagaaaaatctattaatacacagtctacatcagcacttagtcatcaatcttcagca
ttaattcttgaagaatgtcctactcgctgggatgacttacaagtatggttgcgacgggca
attcaaactaataataaactagcgatcgcatatccacaacccgaacaactacccgctaat
aaaatttgggaacaattagtaggaattgctaaataccttagtcgcacaggtaaaacagta
actttagatcaaattcaggataagttaggagtgagcgatcgcgcccttcagctaggactc
cgtacccttacacagcttggttttcagattactacattcgacaaccatatccaaatcatt
tggtcatctgacagctatttccaccatacagaagatcaacttactagcgcaagcgagcaa
tttttagcagcagtagccgaagaacaattttatcaacgttacttctatgttgttcccctg
actactattcaatctatggctcgtgaaactgtttataggtaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (16)   
   KEGG ORTHOLOGY (1)   
   RefGene (13)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (28)   

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