KEGG   Canis lupus familiaris (dog): 483825
Entry
483825            CDS       T01007                                 
Symbol
PABPC4L
Name
(RefSeq) polyadenylate-binding protein 4-like
  KO
K13126  polyadenylate-binding protein
Organism
cfa  Canis lupus familiaris (dog)
Pathway
cfa03015  mRNA surveillance pathway
cfa03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:cfa00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    483825 (PABPC4L)
  09123 Folding, sorting and degradation
   03018 RNA degradation
    483825 (PABPC4L)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cfa03019]
    483825 (PABPC4L)
   03041 Spliceosome [BR:cfa03041]
    483825 (PABPC4L)
Messenger RNA biogenesis [BR:cfa03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    eIF4F and regulatory proteins
     483825 (PABPC4L)
   mRNA cycle factors
    Stress granule specific factors
     483825 (PABPC4L)
Spliceosome [BR:cfa03041]
 Complex C
  Other components
   Complex C specific factors
    483825 (PABPC4L)
SSDB
Motif
Pfam: RRM_1 RRM_5 RRM_7 RRM_occluded MARF1_RRM1 Nup35_RRM BRAP2 DUF4523 DM9
Other DBs
NCBI-GeneID: 483825
NCBI-ProteinID: XP_005631854
Position
19:8053436..8054738
AA seq 370 aa
MNVAAKYRQASLYVGDLDAEVTEDALFRKFSAAGPVLSIRICRDLLTRRSLGYAYVNFLR
LADAQRALDTMNFDVLRGRPLRLMWSQRDAHLRKSGVGNVFIKNLDRSVDDKALFERFSA
FGKILSSKVVSDERGSRGYAFVHFQEQSAADRAIEHMNGAQLRGCRLFVGRFQSRQAREA
ELRSRAGEFTNLYIKNFGGRMDDARLRAVFSEYGKTLSVKVMTDASGRSRGFGFVSFESH
EAARRAVEALNGRQVDGQPLFVGRAQRKAERQAELRRAFEQRQQDGLRRAQGAKLYVKNL
DDAVDEDRLRREFSGFGAVSRVKIMREEGRSKGFGLICFSSADEAARALAEMNGRVLGSK
PLSIALAQRP
NT seq 1113 nt   +upstreamnt  +downstreamnt
atgaacgtggccgccaagtaccgccaggcgtccctgtacgtgggggatctcgacgccgag
gtcaccgaggacgcgctgttccggaagttcagcgccgcggggcccgtgctgtccatccgc
atctgcagggacctgctgacccgccgctcgctgggctacgcctacgtgaacttcctgcgg
ctggcggacgcgcagcgggccctggacaccatgaacttcgacgtgctgcggggccggccg
ctccgcctcatgtggtcccagcgcgacgcgcacctgcggaagtcgggcgtcgggaacgtg
ttcatcaagaacctggaccggtccgtggacgacaaggccctcttcgagcgcttctcggcc
ttcgggaagatcctgtcgtccaaggtggtgagcgacgagcgcggctcccgcggctacgcg
ttcgtgcacttccaggagcagagcgccgccgaccgcgccatcgagcacatgaacggggcg
cagctccgcggctgcaggctcttcgtgggccgcttccagagccgccaggcccgcgaggcc
gagctgcgcagccgcgccggcgagttcaccaacctgtacatcaagaacttcggcggccgc
atggacgacgccaggctcagggccgtgttcagcgagtacggcaagaccctgagcgtcaag
gtgatgaccgacgccagcggcaggtcccgcggcttcggcttcgtgagcttcgagagccac
gaggcggcccggcgggcggtggaggccctgaacggcaggcaggtggacgggcagccgctg
ttcgtgggccgcgcgcagaggaaggcggagcggcaggcggagctcaggcgggccttcgag
cagcggcagcaggacgggctccgcagggcccagggcgccaagctctacgtcaagaacctg
gacgacgccgtcgacgaggacaggctgcgcagggagttttctggcttcggagccgtcagc
agggtcaagatcatgcgggaggaagggcggagcaaaggctttggcctcatctgcttctcc
tctgccgacgaggccgccagggccttggccgagatgaacggccgcgtgctgggctccaag
ccgctgtccatcgccctggcccagaggccctag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (52)   
   KEGG ORTHOLOGY (1)   
   RefGene (48)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (5)   
   RefSeq(pep) (5)   
DNA sequence (5)   
   RefSeq(nuc) (5)   
Protein domain (9)   
   Pfam (9)   
All databases (77)   

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