KEGG   Citrobacter farmeri: CI104_24570
Entry
CI104_24570       CDS       T05012                                 
Name
(GenBank) DNA polymerase I
  KO
K02335  DNA polymerase I [EC:2.7.7.7]
Organism
cfar  Citrobacter farmeri
Pathway
cfar03030  DNA replication
cfar03410  Base excision repair
cfar03420  Nucleotide excision repair
cfar03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:cfar00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    CI104_24570
   03410 Base excision repair
    CI104_24570
   03420 Nucleotide excision repair
    CI104_24570
   03440 Homologous recombination
    CI104_24570
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:cfar03032]
    CI104_24570
   03400 DNA repair and recombination proteins [BR:cfar03400]
    CI104_24570
Enzymes [BR:cfar01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     CI104_24570
DNA replication proteins [BR:cfar03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     CI104_24570
DNA repair and recombination proteins [BR:cfar03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA polymerase I
     CI104_24570
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     CI104_24570
SSDB
Motif
Pfam: DNA_pol_A 5_3_exonuc_N DNA_pol_A_exo1 5_3_exonuc HHH_5 HHH HHH_2
Other DBs
NCBI-ProteinID: AST82030
Position
complement(4979725..4982511)
AA seq 928 aa
MVQIPENPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLILQYQPTHAAV
VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT
LAREAEKMGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPDEVVTKYGVPPELIIDFL
ALMGDSSDNIPGVPGVGEKTAQALLQGLGSLDTLYAESDKIAGLTFRGAKTMAGKLEQNK
EVAYLSYKLATIKTDVELELTCEQLEVQQPQADELVGLFKKYEFKRWTADVEAGKWLQAK
GAKPAAKPQETIVVDETVEEAAAVLSYDNYVTILDESTLETWIAKLKKAPVFAFDTETDS
LDNISANLVGLSFAIEPGVAAYVPVAHDYLDAPDQISRDRALAMLKPLLEDENARKVGQN
LKYDRGILANYGIELRGIAFDTMLESYILNSVAGRHDMDSLSDRWLKHKTITFEEIAGKG
KNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPELQQHKGPLNVFENIEMPLVPVLSRV
ERNGVKIDPAVLHKHSEEITLRLAELEQKAHDIAGEVFNLSSTKQLQTILFEKQGIKPLK
KTPGGAPSTSEEVLEELALDYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYH
QAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIPPKDYLIVSADYSQIELRIMAHLSRD
KGLLTAFAEGKDIHRATAAEVFGLALETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIP
RKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLEGRRLYLPDIKSSNGARRAGAE
RAAINAPMQGTAADIIKRAMIAVDGWLETEKPRVRMIMQVHDELVFEVHKDDLDAAAKKI
HQLMENCTRIDVPLLVEVGSGENWDQAH
NT seq 2787 nt   +upstreamnt  +downstreamnt
atggttcagatcccagaaaacccacttatccttgtagatggctcttcttatctctatcgc
gcataccatgcgtttccgccgctgaccaatagcgcaggtgaaccgacaggcgcgatgtac
ggtgtcctcaatatgctgcgcagtctgatcctccagtatcagccaacacatgccgcagtg
gtatttgatgccaagggtaaaactttccgtgacgaattattcgagcattacaaatcacat
cgcccaccaatgccggacgatctgcgggcgcagatcgaaccgctgcatgcgatggtgaaa
gcgatggggctgccgcttctggccgtatccggtgtggaagcggacgatgtaatcggcacc
ctggcgcgtgaagcagaaaaaatgggacggccggtgctgattagtaccggtgataaagat
atggcccagttggtcactccaaacatcacactcatcaataccatgaccaataccattctt
ggtccggatgaggtagtgacaaaatatggcgtgccacccgaactgatcatcgactttctg
gcgctaatgggcgattcctccgataacattcccggtgtgccaggcgttggggaaaagacc
gctcaggcactgttacagggactggggagtctggatacgctttacgctgagtcagataaa
attgccgggttgacgttccgtggtgcgaaaaccatggcgggcaaacttgagcaaaataaa
gaggttgcctatctctcctataaactggcgacgatcaaaacagacgttgagctggaactg
acctgcgaacagttggaagtgcaacagccacaggctgacgaactggtcgggctgtttaaa
aagtatgagttcaaacgctggaccgctgatgttgaagctggcaagtggctacaggcgaaa
ggggcgaaaccggcagcaaaaccgcaggagacgatcgttgttgatgaaaccgtggaagaa
gccgcagccgtgctttcctacgataactacgtgaccattctcgatgaatcgacgctggaa
acgtggattgcgaagctgaaaaaagcgccggtgtttgccttcgataccgaaaccgacagt
ctggataacatctcagccaatctggtagggctttcattcgccattgaaccgggcgtagcg
gcttatgtacccgtggcgcatgactatctggatgcaccggatcaaatctcccgtgaccgc
gcgctggcgatgctcaaaccgctgctggaagatgaaaacgcgcgtaaggtcggacaaaac
ctgaagtacgatcgcggcattctggcgaattatggcattgaattgcggggtattgctttt
gataccatgctcgaatcgtacattctgaatagtgttgccggacgccacgatatggacagc
ctgtccgatcgctggctgaagcacaaaaccatcaccttcgaagaaattgcgggtaaaggg
aagaaccaactgacctttaatcagattgcgctggaagaggccgggcgttacgcggcagaa
gatgccgatgttaccttgcaactgcatttgaaaatgtggccagaattgcagcagcacaaa
ggaccgttgaatgtctttgaaaacatcgaaatgccgctggttccggtgttatctcgtgta
gagcgtaacggtgtgaagatcgaccctgcggtactgcataagcactccgaggagatcacc
ctgcgtctggcggagctggaacagaaggctcatgatatcgcaggagaagtgtttaacctc
tcttcaaccaagcagttgcagacgatcctgttcgaaaagcagggcattaagccactgaag
aaaacgccgggcggcgcgccatcgacgtctgaagaggtgctggaagagttggcgctggat
tacccattacctaaagtgattcttgagtatcgtggcctggcgaagctgaaatcgacctac
actgataaactgccgctgatgattaacccgaaaaccgggcgtgtgcatacgtcatatcat
caggccgtgaccgcgacgggccgcctgtcatcaaccgacccaaacctgcaaaacataccg
gtacgtaacgaggaaggacgtcgtatccgtcaggcatttatcccgccgaaggattacctg
attgtttctgcggactattcgcagattgagctgcgaattatggcgcacttgtcacgcgac
aaaggcctgctgacggcgtttgccgaagggaaagatattcaccgcgccaccgccgcagaa
gtatttggtctggcgctggagaccgtgaccagtgagcagcgtcgcagcgcgaaggcgatc
aactttggcctgatctacggcatgagcgcattcggactggcgcgccagttaaacattccg
cgcaaagaagcgcagaagtatatggacctctatttcgaacgctatccgggcgttctggag
tatatggaacgtacgcgtgcgcaggcgaaagagcagggttatgttgaaacactggaaggc
cgccgcctctatcttccggatatcaaatccagcaacggcgcgcgtcgtgccggcgctgag
cgtgcggcgattaacgccccaatgcagggaactgcagccgatatcatcaagcgggcgatg
atcgcggtcgatggctggctggaaacggaaaaaccacgcgtgcgtatgattatgcaggtg
cacgatgaactggtgtttgaagtacacaaagacgacctggacgcggcagcgaaaaagatc
catcagttgatggaaaactgcacgcgcattgatgtgccgctgttagtggaagtcgggagt
ggtgagaactgggatcaggcgcactaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (7)   
   Pfam (7)   
All databases (20)   

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