KEGG   Camponotus floridanus (Florida carpenter ant): 105254375
Entry
105254375         CDS       T03919                                 
Name
(RefSeq) pre-piRNA 3'-exonuclease trimmer
  KO
K01148  poly(A)-specific ribonuclease [EC:3.1.13.4]
Organism
cfo  Camponotus floridanus (Florida carpenter ant)
Pathway
cfo03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:cfo00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    105254375
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cfo03019]
    105254375
Enzymes [BR:cfo01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.4  poly(A)-specific ribonuclease
     105254375
Messenger RNA biogenesis [BR:cfo03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Other 3'-5' decay factors
     105254375
SSDB
Motif
Pfam: CAF1 DNA_pol_A_exo1
Other DBs
NCBI-GeneID: 105254375
NCBI-ProteinID: XP_011261311
Position
Unknown
AA seq 542 aa
MFEVTNENFNTIYPHLERTLKNASFIAIDTELTGLNVDDVKNSLFDSINERYEKQRSSIQ
PYIIIQFGITAFQRIQHENQYTAEAFNFFLLPRSIPSKNRQFVWQVAALEFLTAYEFDFN
KFAYNGISYLNEDDQAILQQQLEENVLFHNVERSMSYREEDSLKDYINQVFEWLNTASDE
TNSLKIDTPTPILQYLTHKELRNRFPNVWTFSGNNMVTVMKIRPDSRAILEQEEGSILEN
VLLESYIGFSKVFKLLVTLKKPIVAHNALLDLMFMYQQFYKPLPKKYTNFKDSLHQLFPT
IYDTKFLSFELREHLSTEQKWKFNSLSGLVEYFTEKQGKYLALGSPNINLTCKINSDKSN
VVPSTKYHTAGWDSYFAGYVFIRLIHVFSAKCYGQSSTLKHFTHTELMNNVKSFANCINI
IRGSTSHLKLDGPEPGSTRPKWLFVKTLASKPITAMQIAEKMSSFGAVDIKQCTSKRMLV
AVANHGSARDILRHFQQNKELYVVPYNPIRHSVTVQLALWGSIAVSSGLLTWLLHQKLQR
SS
NT seq 1629 nt   +upstreamnt  +downstreamnt
atgtttgaggttacgaatgaaaattttaacacgatatatccacacttggaacgtacattg
aaaaatgcgagtttcatagcgattgatacggaattaacaggtttaaatgttgatgatgtc
aaaaatagtttgttcgattccattaacgagcgctatgagaagcagaggagtagcattcaa
ccatacataataattcaatttggtatcactgcgtttcaacgaattcaacatgaaaatcag
tacacggcagaagccttcaatttcttcctgctacctcgatctattccatcaaagaataga
cagtttgtctggcaagtcgctgcattagaattcctgactgcatacgagtttgattttaac
aagtttgcttataatggtatttcatatctcaatgaggatgaccaagcaatcttgcagcaa
caattggaggagaatgtattgtttcataatgtggaaagatctatgtcttacagagaagaa
gacagtctcaaagattatatcaatcaagtattcgaatggttgaatacagcgagtgatgag
acaaactcgttgaaaattgacactcctactccaattttgcagtatctcacgcacaaagaa
ttaagaaatcgtttcccaaatgtttggactttctcagggaataatatggtgactgttatg
aaaattcgaccagattcgagagcaattttagaacaagaagaaggctctatattggaaaat
gtattgctcgaatcatacataggtttttcaaaagtgtttaagcttttggttactttgaaa
aaacctatagtagcacataatgctttgttagatttaatgtttatgtatcaacagttttat
aagccattaccaaaaaaatacactaattttaaggatagcctacatcaattatttccaaca
atttacgacacaaaatttttaagctttgaattgagagagcatctttcaacagaacaaaaa
tggaaatttaattctttaagtggtttagttgagtatttcacagaaaagcaaggaaaatat
ttagcacttggatcacctaatattaatcttacttgcaaaataaattcagataaatcgaat
gttgtaccttcgacgaaatatcatactgcaggatgggattcttattttgctggctatgtg
tttattcgactaattcatgtattttctgcaaaatgttatggacagagttcaacattgaag
cattttacacatacagaattaatgaataatgtaaaaagtttcgcaaattgcataaatatc
atccgtggcagtacatcacatctgaaacttgatggacctgaaccaggatcgactcgacct
aaatggctttttgtgaaaacgttagcatcgaagccgataaccgccatgcagatagctgaa
aaaatgtcgagttttggtgcggttgacataaaacaatgcacatcgaagcgcatgttagtt
gcagtagcaaatcatggaagcgcacgggacatattgcgacacttccaacaaaacaaggag
ctatatgttgtcccttacaacccgatacggcattcagttacggtccaactcgccctgtgg
ggcagtatagccgtttccagcgggctcttaacttggctgctgcatcagaagctgcagaga
agctcttag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (14)   

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