KEGG   Camponotus floridanus (Florida carpenter ant): 105258143
Entry
105258143         CDS       T03919                                 
Name
(RefSeq) replication factor C subunit 1 isoform X1
  KO
K10754  replication factor C subunit 1
Organism
cfo  Camponotus floridanus (Florida carpenter ant)
Pathway
cfo03030  DNA replication
cfo03410  Base excision repair
cfo03420  Nucleotide excision repair
cfo03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:cfo00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    105258143
   03410 Base excision repair
    105258143
   03420 Nucleotide excision repair
    105258143
   03430 Mismatch repair
    105258143
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:cfo03032]
    105258143
   03400 DNA repair and recombination proteins [BR:cfo03400]
    105258143
DNA replication proteins [BR:cfo03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    105258143
DNA repair and recombination proteins [BR:cfo03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     105258143
SSDB
Motif
Pfam: RFC1 AAA BRCT Rad17 DNA_pol3_delta AAA_30 RuvB_N AAA_5 AAA_22 AAA_14 AAA_16 RNA_helicase AAA_33 AAA_6 NTPase_1 AAA_17 AAA_18 AAA_19 AAA_7 Viral_helicase1 DUF3053
Other DBs
NCBI-GeneID: 105258143
NCBI-ProteinID: XP_011267536
Position
Unknown
AA seq 1024 aa
MPRDIRSYFTSVATSQKKNSEPGALKPQKRRVISSDEDEKSKSPAKRSKIVQKKATKVSV
LSDSDDDVIVINSKEDFTKSRANKKNEIKKPRKEISSSELFGKKPIMRIEEAKVNKKLQK
LESEFHNDDDFEAALKQLDTSKDIITQDTKEDKNGIENSSNLKNSEATIKTEIVPNKSKK
HDTSLEKSQTKMNTNTKKMKKSPKKNKIHLKLISPSKEKLKINKSNSSSNEDLDINSKYN
DDKLKKLNWNNLTINISKQVSAAKENESIKKQSSDRKKIEADLFEERIEKKKQRAVMYEK
YLQRGGARNPGSKEIPTGAPNCLAGVSFLLTGVFDSLERDEAEHLIRKYSGRTVNTVSGK
VNYIIVGDEAGPAKLAKANSLGIKQISEDDLLEMIRTRPEGKTEDVFITKAKSNAKKILN
KSEEDKSPLSKEEKSASTNSYDLSEKINICAPVIPKQTLDAINYSQETTSIGSQPLVEKY
RPKTMKQIIGQQGDKSCARNLHVWLRDWYKNRQNSKLKNGSKQTHGESFKAALLSGPPGV
GKTTTVQVVCKELGYDLVEFNASDTRNKTLLKEEVSGLLSNTTMKDYVTGTKQKTTSKHV
LLMDEVDGMAGNEDRGGLQELLTLIKNTEVPIICICNDRFNTRVKTISMHSYDLRFHKLR
VEQIRSAMLSLCYKENIKMPTEDLNRLIESTNYDIRQVINHLEFLGGRTPHVEATDKKHS
NKNFKLGPFDVIKMAFNAEEQKNMSLNDKIGLYFHDYNIAPLFVQENYLSVRSSQVPLLQ
KLDKIAHAADSISQGDVIEKAMRSNMMWSLLPLHACFSFVIPTNEMSGNLDALVRFPGWF
GRNSKATRFNRLIQELTTHTRLTTGANKDALNMDYMVHIRNAIIKPLIDNGTDGIEAAIN
IMGKYHLTREDLDSMIEISLWPGVRDPTSNLDSKVKAAFTRAYQKNSPMLPYAINSNVAA
KKRSLQDEDFIEEENNEEEDDSIEFDKMIKAKKPTASTSKAAVSTKRNGEPAKKRARKGR
DKPK
NT seq 3075 nt   +upstreamnt  +downstreamnt
atgccgcgggatataagatcttactttacgtcggttgcgacttctcagaaaaagaacagc
gagcctggtgctttaaaaccccaaaagaggcgtgtaatttcttcggacgaagatgagaag
tcaaagtcacctgcaaaacgttccaagattgtacaaaaaaaagcgaccaaagtttctgtc
ttgtctgactccgatgatgatgtaattgtgataaatagtaaggaagattttacaaaatca
agagcaaacaagaaaaatgagattaagaagccacgtaaagaaatctcttctagcgaattg
tttggcaaaaagccaataatgagaatagaggaggcaaaagtgaataaaaaactgcagaaa
ctggaatctgaatttcacaatgatgatgattttgaagctgcacttaaacaactggatact
tcgaaagatataataacacaggatacaaaagaagataaaaatggcattgaaaattcaagt
aatttaaaaaattctgaagcaacaattaaaacagagatagttcctaataaaagcaagaaa
catgatacttctttggaaaaaagtcaaacaaaaatgaatacaaatactaaaaagatgaaa
aaatctcccaaaaaaaataagatacatttaaaacttatttctccttcaaaagagaaatta
aaaattaataaaagtaactccagctccaatgaagatttagatataaacagtaaatataat
gatgacaaattaaaaaaattaaactggaacaacttgacaataaatatctcgaaacaagtt
tcagctgcgaaagaaaatgaaagtataaagaaacaatcgtcagataggaagaaaatcgaa
gcggatttatttgaggaaagaatagaaaaaaagaagcagcgtgctgtaatgtatgaaaaa
tatcttcagagaggaggcgccagaaatcccggttcaaaggaaattcctacaggtgcacca
aactgtttagctggtgtgagtttcttactcactggtgtttttgattcactggaaagagat
gaagctgagcatttaatacggaaatacagtggtcgtactgtgaataccgtttcgggcaaa
gttaattatatcatagtaggagatgaagctggtccagcaaaattggcaaaggccaatagt
ttgggcatcaaacaaatatccgaagatgatctcttagaaatgattcgtacaagaccagaa
ggtaaaactgaagatgtatttataacaaaggcgaaatcaaacgcgaagaaaatattgaat
aaatctgaggaggataaatcgccattatcaaaagaagaaaaatcggcatcaacaaattcg
tacgatctttctgaaaagataaatatatgtgcacctgtgataccaaagcagacattggat
gcaattaattattcgcaagagactacaagcatcggttcgcaaccgttagttgaaaagtat
agacctaaaaccatgaaacagattataggacagcaaggagataagagctgcgcacgcaat
ttacatgtgtggttgcgcgattggtataagaatcgccaaaattcgaaattaaaaaacggc
agcaaacaaacccatggagaaagtttcaaagctgctttgttgtcgggtcccccaggcgtt
ggtaaaacaacaactgtgcaggttgtttgtaaagaattggggtacgatcttgtagaattc
aatgcttctgacacaagaaataagactctcctgaaagaagaagtctcaggattattatcc
aacactacgatgaaagattatgtcactggtactaaacaaaagaccacaagtaagcatgta
ctgttgatggacgaagtcgatggcatggctggcaacgaagatcgcggaggtttacaagaa
ttacttactttaataaaaaataccgaagtgccaattatctgtatctgcaatgaccgattt
aatacaagagtgaagactatttccatgcacagctacgatctaagatttcacaagctcaga
gtggagcaaatcaggagtgctatgttgtctctatgctataaagagaatattaagatgccg
acggaggatcttaatcgtctaatcgagtcgacgaattatgatattcgacaagtgataaat
cacctcgaatttctcggcggtcgtacacctcatgtggaggcgaccgacaagaagcattcg
aataagaacttcaaactcggcccgtttgacgttataaaaatggcattcaacgcggaagag
caaaaaaatatgagtttaaacgataagattggtttatatttccacgattacaacatagca
cctcttttcgttcaagaaaattacctgagtgtcagatcatctcaagtaccacttcttcag
aagctggataaaattgctcatgcggctgacagtatatcccaaggagatgtcatcgagaag
gcaatgagaagcaatatgatgtggagtctgcttccattgcacgcttgtttctcgtttgtt
ataccaactaatgaaatgtcggggaatcttgatgcgttggtgcgttttccgggttggttc
gggcgaaactcgaaggctacgagatttaatagattaatacaagaattaacgacgcatacg
cgattaacgacaggcgcaaataaagacgctctgaatatggattatatggttcatattcga
aatgccattataaaacctctaatagataacggtacggatggtattgaagcagcaataaac
atcatgggaaaatatcatttaacaagagaggatttggattcaatgatagagatttctctc
tggccaggagttcgcgatcctacgagtaatcttgatagcaaagtgaaagcagcatttaca
cgagcgtatcaaaagaattctcctatgctgccatatgcaattaacagcaatgttgcagca
aagaaaagatctttgcaagatgaagatttcatagaagaggaaaataatgaagaagaggat
gacagtatcgagttcgacaaaatgatcaaggcaaagaaacctactgctagtactagtaaa
gctgctgtatctacgaaaagaaacggcgaaccagctaaaaaacgtgcaagaaagggacgg
gataaacccaaatag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (4)   
   KEGG PATHWAY (4)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (21)   
   Pfam (21)   
All databases (37)   

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