KEGG   Campylobacter fetus subsp. fetus 04/554: CFF04554_0876
Entry
CFF04554_0876     CDS       T03330                                 
Symbol
uvrB
Name
(GenBank) UvrABC nucleotide excision repair complex, subunit UvrB
  KO
K03702  excinuclease ABC subunit B
Organism
cft  Campylobacter fetus subsp. fetus 04/554
Pathway
cft03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:cft00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    CFF04554_0876 (uvrB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:cft03400]
    CFF04554_0876 (uvrB)
DNA repair and recombination proteins [BR:cft03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     CFF04554_0876 (uvrB)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      CFF04554_0876 (uvrB)
SSDB
Motif
Pfam: UvrB_inter Helicase_C UvrB ResIII UVR DEAD SWI2_SNF2 Kinesin AAA_30 UB2H Microtub_bd AAA_16 Focal_AT DUF1574 AAA_22 AAA_7 DUF3873 DUF87
Other DBs
NCBI-ProteinID: AIR78790
Position
877069..879045
AA seq 658 aa
MDKFEISSKFKPSDDQEKAVTNIVDSIRSGNKFNVLLGVTGSGKTFTMANVIKRLNMPTL
IMTHNKSLAAQLYSEFKGFFPKNHVEYFISYYDYYQPEAYIPRQDLFIEKDSSINEELER
LRLSATANLLEFDDVVVVASVSANYGLGNPAEYKGMVLLLSLGMSLNQKELLLKLVDMGY
KRNDAYFDRGDFRVNGDVVDIYPAYFNDEAIRLEFFGDELDAMYHFDVLENKRTKDVSKF
ILYATSQFIVGENRLKQAIKDIELELEDRLAFYEKENRLVEYQRLKQRVEFDLEMLSSTG
STKGVENYARYLTGQKAGETPYSLFDYFEVSGKDYLVIVDESHVSLPQFRGMYAGDRSRK
EVLVEYGFRLPSALDNRPLKFDEFIAKKANYLFVSATPNQYEIDLSQGHVYEQILRPTGL
LDPRIEVISSDNQVEVLFDRAKAVIARGERVLVTTLTKKMSEELTRYYQELGIKVKYMHS
DIDAVERNELIRGLRKGEFDMLVGINLLREGLDLPEVSLVAVLDADKEGFLRSRTSLIQI
MGRAARNVNGTVILFANKITNSMKEAIDTTEARRKYQGDYNKKYGITPRSASRNLEDSLK
EEDLPNLYNKAKKLEKMPASERAKIVKELRKQMLEAAKNLEFEKAAALRDEIAKLREL
NT seq 1977 nt   +upstreamnt  +downstreamnt
atggataaatttgagatatctagtaaatttaagccaagcgatgatcaagaaaaagccgta
acaaacatagtagatagcataagatccggaaataaatttaacgtccttttaggagtaact
ggaagcggtaaaacttttacgatggcaaatgtgataaaacgcctaaatatgccgactctc
atcatgacacacaacaaaagcttagccgcgcagctttatagcgaattcaaaggctttttt
cctaaaaatcacgtcgagtatttcataagctactatgattactaccaacctgaagcctat
ataccgcgccaagatctttttatagaaaaagatagctctataaatgaagaattggagcgt
ttaagacttagtgcgactgcgaatttgcttgagtttgatgatgtggtagtcgtggcttcc
gtatctgcaaactacggtttaggaaatcctgctgaatataaaggtatggttttactgctg
agtttaggtatgagcttaaatcaaaaagagttacttttaaaactagtagatatgggatat
aaaagaaacgatgcgtactttgatcgtggagattttcgagtaaatggtgacgtggtagat
atctatccggcgtattttaacgatgaagccatcagacttgagttttttggagacgagctt
gacgctatgtatcactttgacgtattagaaaacaaacgcactaaagacgttagcaaattt
atactatatgcaacaagtcagtttatagtcggcgaaaatagactaaaacaagcgataaaa
gatatcgagcttgaacttgaagataggcttgcattttatgaaaaagaaaatagattagtc
gagtatcaaaggcttaagcaaagagtggaatttgaccttgagatgctctcaagcaccgga
agtaccaaaggcgtagaaaattacgcgcgttatctaacagggcaaaaagcaggagagacg
ccgtattctttgtttgattactttgaagtgagcggcaaggactatcttgttatagtagat
gaaagccacgtgagtttgccacaatttcgcggaatgtacgcaggcgatagaagtagaaaa
gaggttttagtcgagtacggtttcagacttccttctgcgcttgataacagacctttgaaa
tttgatgagtttatagcaaaaaaggcaaactatctgtttgtctcagccactccaaaccag
tatgagatagatctctcacaaggtcatgtttatgagcaaatacttaggcctaccggactt
cttgatccacgcatagaagtcataagtagcgataatcaagtagaagttttgtttgatagg
gcaaaagcagtcatagcaagaggcgaaagagtgctagtaacgactctaactaaaaagatg
agtgaagagctaacgcgctactaccaagaacttggtatcaaggtcaaatacatgcactca
gacatcgacgcagtcgaaagaaacgagcttataagaggtcttagaaaaggggagttcgat
atgcttgttggtataaatttactccgtgaggggctagatctaccagaagtctctttggta
gctgttttagacgccgacaaagagggctttttaagaagtcgtacaagcctcatacaaatt
atgggaagagcagctagaaacgtaaatggaacggttatattatttgcaaataaaataaca
aattctatgaaagaagccatagatacaactgaagcaaggcgtaaatatcagggcgattat
aacaaaaagtacggtataactccgcgctcggctagtagaaatttagaagatagcttaaaa
gaagaagatctaccaaatttatataacaaagccaaaaaattagaaaaaatgccggcgagt
gagcgagcaaaaatcgtaaaagaactaagaaaacagatgcttgaagcggctaagaatttg
gaatttgaaaaagctgcggctctaagagacgagatagcaaaacttagagagctttaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (18)   
   Pfam (18)   
All databases (25)   

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