KEGG T05065: CYFUS

Cystobacter fuscus: CYFUS_000098

Entry

CYFUS_000098      CDS       T05065

Name

(GenBank) RNA-splicing ligase RtcB

K14415

tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]

Organism

cfus Cystobacter fuscus

Brite

KEGG Orthology (KO) [BR:cfus00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:cfus03016]
    CYFUS_000098
Enzymes [BR:cfus01000]
6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.8  3'-phosphate/5'-hydroxy nucleic acid ligase
     CYFUS_000098
Transfer RNA biogenesis [BR:cfus03016]
Eukaryotic type
  tRNA spricing factors
   tRNA splicing ligase complex
    CYFUS_000098
Prokaryotic type
   tRNA splicing ligases
    CYFUS_000098

SSDB

Motif

Pfam:

RtcB

Other DBs

NCBI-ProteinID:

ATB34691

UniProt:

A0A250IU61

Position

complement(114762..116114)

AA seq 450 aa
MSWTQQLEKVAPGHFVLPKTKTMRVEAHLFLSDKLLWGEGPESPGLEEAVFNQVVNAASF
PGVTRVAVTPDCHVGYGVPIGTVVETEGVLLPTAAGYDIGCGMVQLQTTLTAEDVADPAK
RRQWIDEVTRRIAVGVGASRVQKQRRIDARTFAEVVRHGAQALGRHASATERDFLPVEDD
RVDIPTRAYEKREQLGSLGGGNHFTEMQVDESGRVWVMLHTGSRGFGWNIAKHFFVEGAA
ALGLGKHSEDFIWLDASSRLGKEYWNLHNMAANFAVANRLLIGEAVCGALEDVFGGTASI
YYEISHNLIQKESGRFVARKGATRAFPGGHPALTGTPWAKSGHPILIPGSMETGSAILFA
EKGAEQSIYSVNHGAGRRLSRGEARRVLDQDETDLRMMEADILLNTRTTPLDESGPCYKN
LDDVLNTVEMAGLATVARRLKPVACIKGAD

NT seq 1353 nt +upstreamnt +downstreamnt
atgagttggacgcaacagttggagaaggtcgcgccggggcacttcgtgctgccaaagacg
aagacgatgcgggtggaggcccacctcttcctctcggacaagctcttgtggggcgagggc
cccgagtctcccgggctcgaggaggccgtcttcaaccaggtggtcaacgccgcctccttc
ccgggtgtcacgcgcgtggcggtgacgccggactgccacgtgggctacggcgtgcccatc
ggcacggtggtggagaccgagggcgtgctgctgcccaccgcggccggctacgacatcggc
tgcggcatggtgcaattgcagaccaccctcaccgccgaggacgtggccgaccccgccaaa
cgccgccagtggatcgacgaggtcacccggcgcatcgcggtgggcgtgggcgcgtcacgg
gtacagaagcagcgccgcatcgacgcgcgcaccttcgccgaggtcgtgcggcacggggcc
caggcgctcggccgtcacgcgtccgccaccgagcgcgacttcctcccggtggaggacgat
cgggtggacatccccacgcgggcctacgagaagcgcgagcagctcggcagcctcgggggt
ggcaaccacttcaccgagatgcaggtggatgagtccgggcgcgtgtgggtgatgctgcac
acgggcagccgcggcttcggctggaacatcgccaagcacttcttcgtggagggcgcggcg
gcgctggggctcggcaagcacagcgaggacttcatctggctcgacgccagcagccgcctg
ggcaaggaatactggaacctgcacaacatggcggccaacttcgcggtggccaaccggctg
ctcatcggcgaggcggtgtgcggcgcgctcgaggacgtgttcggcggcacggcgagcatc
tactacgagatctcccacaacctcatccagaaggagtcgggccggttcgtggcgcgcaag
ggcgccacgcgcgccttccccggcggccaccccgccctcaccggcacgccctgggccaag
agcggccatcccatcctcatccccggctccatggagaccggcagcgccatcctcttcgcc
gagaagggggccgagcagtccatctactcggtgaaccacggcgcggggcggcggctgtcg
cgcggcgaggcgcgacgggtgttggatcaggacgagacggacctgcgcatgatggaggcc
gacatcctcctcaacacgcgcaccacgccgctggacgagtcgggcccctgctacaagaac
ctcgacgacgtgttgaacacggtggagatggcgggcctggccacggtggcccggcgactc
aagccggtggcctgcatcaagggcgcggactga

All links

Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (10)   
   KEGG ORTHOLOGY (1)   
   RefGene (7)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (1)   
   Pfam (1)   
All databases (17)   

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