KEGG   Corynebacterium glyciniphilum: CGLY_08870
Entry
CGLY_08870        CDS       T03073                                 
Name
(GenBank) Putative ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
cgy  Corynebacterium glyciniphilum
Brite
KEGG Orthology (KO) [BR:cgy00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    CGLY_08870
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:cgy03400]
    CGLY_08870
Enzymes [BR:cgy01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     CGLY_08870
DNA repair and recombination proteins [BR:cgy03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     CGLY_08870
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N
Other DBs
NCBI-ProteinID: AHW64219
UniProt: X5DSE8
Position
complement(1896994..1898283)
AA seq 429 aa
MSTAETVEVDGRSVRVTHPNKVMYPSTGTTKRDVIDYLLTVAPWLVGHAHDRPATRKRWV
DGVGTAEHPGQFFFERNLRPGSAPDWVTTRQFEHQTRLTRYPMVNDAATLIWLAQLDALE
IHTPQWRYGPRGGIHGPDRMVFDLDPGEGASLAQCADVAHLVREELDARDLMSVPVTTGS
SGIHVYAEVASGHRPSVVRDIVHRIADDIAGKHPDLVVSRMAREERRGRVLIDWSQNDGV
KTTCVPYSLRGRARPTVAAPRTWDEIDSGVRQLGFRQVADRLLSTGDPLDVLLGPGDGGP
SFVIQEHDASHLHWDFRLEHDGVLVSWALPKGVPRDSGTNRLAVQTEDHPLSYGGFEGRI
DEGSPGAGTVDIWDAGSYSLEKWRDDEIVMTLYGRQNGGLGGEPQKFSLIRTRMNDDSRN
WLLHLMSTK
NT seq 1290 nt   +upstreamnt  +downstreamnt
atgagtactgccgagaccgttgaggtcgacggacgttctgtgcgggtcacacacccgaac
aaggtgatgtacccgtcaaccgggaccaccaaacgcgacgtcatcgactacctgctcaca
gtcgctccatggctggtgggtcatgcgcatgaccgaccagccactcgcaagcggtgggtc
gacggggtggggaccgccgaacacccggggcagttcttctttgagcggaatctgcgtccg
ggtagtgcgccggactgggtgacaacgcggcagttcgagcaccagacccgactgacccgc
tatccgatggtcaatgatgcggccacgctcatctggctcgctcagctggacgcgctcgag
atccacacgccccagtggcgttacgggccgcgtggcggcattcacggccctgaccggatg
gtcttcgaccttgaccctggtgagggggcaagtctggcgcagtgcgcggacgttgcacat
ctcgtccgggaagaactcgatgcgcgcgaccttatgtcagtacccgtgactacgggcagc
agcgggatccatgtctacgcggaggtggcctcaggccaccgcccgtccgtcgtccgggat
atcgtccatcgcatcgctgacgatatcgccgggaaacacccggatctcgtggtgtccagg
atggccagggaagagcgtcggggaagagtcctgattgactggagtcagaacgacggggtg
aaaaccacgtgcgtaccctattcactgcgcggacgggcgcgtccgacggtcgcagcgccc
cgtacctgggatgaaatcgacagtggcgttcggcaactcggcttccggcaggtcgccgac
cggctgctcagcaccggtgatccgttggacgtcctgctgggccccggtgacggcggaccg
tccttcgtcatccaggaacatgatgcatcgcacctgcactgggacttccgcttggagcat
gacggcgtgctggtgtcctgggcactgccgaaaggggtgccccgggactccggaaccaac
cggctggcggtgcagaccgaggatcatccgctcagctacggcggattcgagggcaggatc
gacgaaggaagccccggtgccggcaccgtggatatctgggacgcggggtcctacagcctc
gagaaatggcgggacgacgagatcgtcatgaccttatacgggcgacagaatggaggactc
ggcggggaaccacaaaagttctccctgatccggacacggatgaatgacgacagcagaaac
tggttgctgcatctgatgtccacgaagtga

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Ontology (3)   
   KEGG BRITE (3)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (2)   
   Pfam (2)   
All databases (17)   

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