KEGG T01861: CPS0B

Chlamydia psittaci 02DC15: CPS0B_0268

Entry

CPS0B_0268        CDS       T01861

Name

(GenBank) putative vacB/Rnb family exoribonuclease

K12573

ribonuclease R [EC:3.1.13.1]

Organism

chi Chlamydia psittaci 02DC15

Pathway

chi03018

RNA degradation

Brite

KEGG Orthology (KO) [BR:chi00001]
09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    CPS0B_0268
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:chi03019]
    CPS0B_0268
   03016 Transfer RNA biogenesis [BR:chi03016]
    CPS0B_0268
Enzymes [BR:chi01000]
3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     CPS0B_0268
Messenger RNA biogenesis [BR:chi03019]
Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     CPS0B_0268
Transfer RNA biogenesis [BR:chi03016]
Prokaryotic type
  tRNA degradation factors
   CPS0B_0268

SSDB

Motif

Pfam:

RNB OB_RNB CSD2

Other DBs

NCBI-ProteinID:

AEG87247

Position

complement(253781..255826)

AA seq 681 aa
MKRIRKKRPQSFRRNSKQILISGVLFVHGKKGFGFVTPDHPEEYPFDIFIPARDLKGALD
GDHVVVSLFPNSKEGEKRKGVIHQVISRGKTVLVGTITSLIDASTAFVCVNALGPEIPVK
AKLIPKRDYKIGDRLLLSTPVWKAKPESKEPPPLEMLEFIGNISNAKSDFPCIKAEYGIQ
EEFPEAVIEETNHFSQKHISQALRSRKDLRNLLCFTIDSITAKDFDDAVSLTYDNNDNYI
LGVHIADVSHYVTPHSALDQEASKRCNSIYFPGKVIPMLPPALSDNLCSLKPNVDRLAVS
VFMTFTKSGHLSDYEIFRSVIRSKYRMTYDEVDEIVENKQPHPIAKTLLAMAELSEKFSD
IREKRGCIRLVLPSFTMSLDNLQEPVTLIETRQTLSHKLIEEFMLKANEVVAYHISHQGV
SLPFRIHESPNDESLLSFQEIAKAMGFDIIMTPAQEPDFQYLLQESSAGHPLEPILHSQF
VRSMKTASYSTENKGHYGLKLDFYTHFTSPIRRYIDLIVHRLLFNPMSIEETRLEHIVRA
CSTQERIAAKSEFAFETLKKNRFLHKFLKEQPDSIYQAYIITINPEGLSFTVPEFCQEGF
IPSAQLPKEFSLKKKTSPDDLPPKMRPGAPIKVKLSEVNLLNQVITWSLATKTSNTIKKS
PASTKKTKEKKPRTRRKRNTE

NT seq 2046 nt +upstreamnt +downstreamnt
gtgaaaagaatcagaaaaaaacgaccacaaagctttagaagaaactcgaaacaaatatta
atttccggcgtcctatttgttcatggaaaaaaaggtttcggttttgttacacccgaccac
ccagaagaatatccttttgatatttttattcccgcaagagatcttaaaggagccttagat
ggagatcacgttgtcgtctctcttttccccaattctaaagaaggagaaaaaagaaaagga
gtcattcaccaagtcatctctagaggcaaaactgttcttgtaggaacaataacctcactc
attgacgcctcaacagcgttcgtctgtgtgaatgctttgggcccagaaatccctgtaaaa
gcaaaacttattcctaaacgtgattataaaatcggcgatcgtttactactcagtactcct
gtatggaaggcaaaacctgaatccaaagaaccccctccgttggaaatgctcgaatttatt
gggaatatctccaacgctaagtccgattttccctgcataaaagctgaatatgggattcaa
gaagaattcccagaagctgttatcgaagaaacgaaccatttctcacaaaaacacattagc
caagcactaagatcacgaaaagatcttcgcaatctcctatgctttactattgactcaata
actgcaaaagacttcgatgatgccgtatccttaacctatgacaataacgataattacatc
cttggcgtccatattgcggatgtctcccactacgtaacacctcactccgctctagatcaa
gaagcaagcaaaagatgtaattctatctactttcctgggaaagtgattcctatgctcccc
cccgctctttcggataatctctgcagtttaaaacctaacgtcgatagactcgccgtttct
gtgttcatgacgtttacaaaatccggtcatttatccgattacgaaatattccgtagtgta
atccgtagtaaatatcgcatgacctatgatgaagtggacgagatcgtagaaaataaacaa
ccccaccctatagcaaaaactcttctcgctatggctgaactcagcgaaaaattctctgat
attagagaaaaacgtgggtgcatacgtcttgttcttccttcattcaccatgtctctagat
aacctacaagaacctgtaactcttatagaaacacgacaaacgctatcacataaactcatc
gaagagtttatgctcaaagctaatgaagtcgttgcttatcatatttcccaccaaggcgtt
tctctgccatttagaatccatgaatctcctaatgatgagagtttgctctctttccaagag
atcgccaaagctatgggatttgatattatcatgaccccagctcaagaacctgattttcaa
tacctattacaagagagctctgcaggacatcctctagagcccattctacattcacaattt
gttcgtagtatgaaaaccgcctcatactcaaccgaaaataaaggtcattatggtcttaaa
ttggatttctatacccacttcaccagccccatccgtcgctatatcgatcttattgttcat
agactcctcttcaaccccatgtctatagaagaaacccgtctagaacatattgtaagagca
tgctctactcaagagcgtatagccgcaaaatctgaatttgcttttgaaacccttaaaaaa
aatcgttttttacataagttcttaaaagaacaacccgactccatttatcaagcttacatc
atcacaatcaatcctgaaggtctctcatttaccgttccggaattttgccaagaaggattt
attccatccgcacaattacccaaagaattctctttgaaaaagaaaacatcccccgatgat
ctacctcctaaaatgcgtccaggagcccctataaaagtcaaactctctgaggtaaatctc
ctcaatcaagtgattacttggtcattggcaaccaaaacatcaaacacaataaaaaaatcc
ccagcgagcacgaaaaaaactaaggagaagaaacctagaactagaagaaaaaggaataca
gaataa

All links

Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (3)   
   Pfam (3)   
All databases (13)   

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