KEGG   Chitinophaga agri: GWR21_19875
Entry
GWR21_19875       CDS       T06416                                 
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
  KO
K03215  23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
Organism
chih  Chitinophaga agri
Brite
KEGG Orthology (KO) [BR:chih00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:chih03009]
    GWR21_19875 (rlmD)
Enzymes [BR:chih01000]
 2. Transferases
  2.1  Transferring one-carbon groups
   2.1.1  Methyltransferases
    2.1.1.190  23S rRNA (uracil1939-C5)-methyltransferase
     GWR21_19875 (rlmD)
Ribosome biogenesis [BR:chih03009]
 Prokaryotic type
  rRNA modification factors
   23S rRNA modification factors
    GWR21_19875 (rlmD)
SSDB
Motif
Pfam: tRNA_U5-meth_tr Methyltransf_31 MTS Cons_hypoth95 Methyltransf_25 Methyltransf_15 TRAM PrmA N6_N4_Mtase PCMT UPF0020 Met_10 Methyltransf_12 Methyltransf_32 Methyltransf_4 Methyltransf_11
Other DBs
NCBI-ProteinID: QHS61777
UniProt: A0A6B9ZIH6
Position
complement(5001781..5003199)
AA seq 472 aa
MRKKNVILEKVPVSAYAAEGKALARIDGKVIFIEGGVVPGDVVDVRLGKNKKDWAEGKAV
HFHTYSPNRVTPFCEHFGNCGGCKWQMLPYDQQLEYKQQQVADNLQRIGKLELPPMQPIL
GSRHITHYRNKLEFTFSNKAYLPEEEMERDEEGNILRKNALGFHVPKLFDKVLDINTCYL
EAEPVNAIRNTIRAYALDNNLSFYDIRAKEGWLRNLVIRICTTGEVMINLVIHHENKKDR
EALLDHLLATVPGITSIVYTINPKLNDTIFDLEPKTYFGKGYIEEKLEDFTFKIGPKSFF
QTNTYQGEALYQVTREFAGLTGTETVYDLYCGTGSIGIFVSRQAGKVIGIELIKEAIDDA
VENAARNNVNNAQFYAGDVVDICDDAFFAQHGQPDVVITDPPRAGMHEKLVNKLLEIAAP
RIVYVSCNPATQARDLALLDVMYSVKRIQPVDMFPHTHHIENVVLLEKRINQ
NT seq 1419 nt   +upstreamnt  +downstreamnt
gtgaggaaaaaaaatgttattctagaaaaagtccctgtaagcgcttatgcagcagagggc
aaggcactggccagaatagatggcaaagtgatatttattgaagggggcgttgtacccgga
gatgtggtagatgtacgcctcggcaaaaacaaaaaagactgggcggagggcaaagccgtg
cacttccatacctattcgcctaaccgcgtaacacccttctgtgaacattttgggaactgt
ggaggctgtaaatggcagatgctgccatatgatcagcagctggaatacaaacaacagcag
gtggctgacaacctgcagcgtatcggtaagctggaattaccgcccatgcagcctattctt
ggctccaggcacatcacccactaccgcaacaaactggaatttaccttcagtaataaggct
tatctcccggaagaggagatggaaagggatgaggagggtaacattctccggaagaacgct
cttggcttccatgtaccgaaactattcgacaaagtactcgatatcaatacctgttacctg
gaggctgagccggtaaatgcgatccgcaataccatccgtgcctatgccctggataacaac
ctctccttttatgacatccgtgccaaagaaggatggctgcggaacctggtcatcaggatc
tgtaccactggtgaagtaatgatcaacctcgttatccaccacgaaaacaaaaaagacagg
gaagccctgctggaccacctgctggcgactgtaccgggtattacctccatcgtttatacc
atcaatccaaaactaaacgataccatcttcgacctggaaccgaaaacctattttggtaaa
ggttatatagaagagaaactggaagatttcaccttcaagattggtccgaagtcatttttc
cagaccaatacctaccagggcgaagctttataccaggtaacaagggaatttgccggatta
actggaacggaaactgtatatgacttatattgtggtactggtagtattggtatttttgtt
tcccggcaggcaggcaaggtaatcggtattgagctgatcaaggaagccattgacgatgct
gttgaaaacgctgcccgcaataatgtgaacaatgcgcaattctacgccggagatgtagtg
gatatctgcgatgatgctttctttgcccagcatgggcaaccggatgtagtgatcactgac
ccaccaagggccggtatgcatgaaaaactggtgaacaagctgctggaaattgctgctccc
cgtatagtatatgtaagctgtaacccggctacgcaggcacgcgaccttgcgctgctggac
gttatgtacagtgtgaaaaggatacaaccagtggatatgttcccccacacacatcatatt
gagaacgttgtgttactggagaaaagaattaatcaataa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (16)   
   Pfam (16)   
All databases (24)   

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