KEGG   Capra hircus (goat): 102171935
Entry
102171935         CDS       T02910                                 
Symbol
SNRNP40
Name
(RefSeq) U5 small nuclear ribonucleoprotein 40 kDa protein
  KO
K12857  Prp8 binding protein
Organism
chx  Capra hircus (goat)
Pathway
chx03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:chx00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    102171935 (SNRNP40)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:chx03041]
    102171935 (SNRNP40)
Spliceosome [BR:chx03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    102171935 (SNRNP40)
 Complex C
   U5 SnRNP specific factors
    102171935 (SNRNP40)
SSDB
Motif
Pfam: WD40 NBCH_WD40 ANAPC4_WD40 eIF2A Cytochrom_D1 WD40_like WDR54 PROPPIN
Other DBs
NCBI-GeneID: 102171935
NCBI-ProteinID: XP_005676792
EnsemblRapid: ENSCHIG00000009344
UniProt: A0A452DZM1
Position
2:complement(13587716..13612445)
AA seq 358 aa
MIEQQKRKGPELPLVPVKRQRHELLLGAAGSGPGAGQQQAAPGALLQAGPPRCSSLQAPI
MLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNT
DGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLW
DIRKKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVT
GLSLSSEGSYLLSNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSK
IAAGSADRFVYVWDTTSRRILYKLPGHAGSINEVAFHPDEPIILSASSDKRLYMGEIQ
NT seq 1077 nt   +upstreamnt  +downstreamnt
atgatagaacagcagaagcgtaagggcccagagttgccactggtcccagtcaagcggcag
cgacatgaattactgttgggagcggcagggtcgggccctggagctgggcagcagcaggcg
gcgccgggagctttgctgcaagcgggtcctccaagatgttcctcccttcaagccccaatc
atgcttctctcaggacatgaaggggaagtttattgctgcaaatttcaccccaatggatcc
accttagcatctgcaggatttgaccgattgatattgttgtggaatgtctatggtgactgt
gataactatgctacattgaagggacacagtggagcagtgatggaacttcattataacaca
gacggcagtatgctcttctcagcatccacagataaaactgtggcggtgtgggatagtgaa
acaggcgagagggttaaaagactgaaggggcatacttcctttgtgaattcctgttaccca
gccaggaggggcccccagcttgtttgcactggcagtgacgacggtacagttaagctttgg
gatatccgcaagaaagcggccatccagacatttcagaacacctaccaagttttagctgtg
actttcaatgatacaagtgatcagattatttctggtggaatagacaatgatatcaaggtc
tgggacctgcgccaaaataagctgacctacacgatgagaggtcatgcagattcagtgact
ggcctgagtttaagttctgaaggctcttacctcttgtccaatgcaatggacaatacagtg
cgggtctgggatgtccggccatttgctcccaaagagcggtgtgtgaagatatttcaagga
aatgtgcacaactttgaaaagaatcttctgagatgttcttggtcacctgatggaagcaag
atagcagctggctcagctgacaggtttgtctacgtctgggataccacaagcaggaggatt
ttgtataaactaccgggccacgctggctccatcaatgaagtggctttccatcccgatgaa
cccatcattctctcagcgtccagtgacaagagactgtatatgggggagattcagtga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   ENSEMBLRAPID (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (3)   
   RefSeq(nuc) (1)   
   GenBank (1)   
   EMBL (1)   
Protein domain (8)   
   Pfam (8)   
All databases (22)   

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